Functional clusters
Information
- Type InterPro
- Description Lipoxygenase, domain 3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_536 | 3 | 11 | 0.000068792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_414 | 4 | 4 | 0.00000000735736 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_893 | 3 | 4 | 0.0000531108 |
| Brassica napus | A07 | 5 | CH_bna_239 | 4 | 4 | 0.000000000392833 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_76 | 5 | 8 | 0.0000000000091122 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_133 | 5 | 11 | 0.000000000996303 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_356 | 3 | 4 | 0.0000294803 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_36 | 7 | 10 | 5.86815e-17 |
| Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_267 | 3 | 3 | 0.00000146619 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_235 | 6 | 6 | 1.23775e-16 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_630 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_631 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm13 | 5 | CH_gma_279 | 4 | 4 | 0.0000000149926 |
| Glycine max | Gm07 | 5 | CH_gma_280 | 4 | 4 | 0.0000000149926 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_363 | 3 | 4 | 0.00000965447 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_147 | 6 | 11 | 0.0000000000000903015 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_622 | 3 | 3 | 0.00000396695 |
| Lotus japonicus | chr6 | 5 | CH_lja_494 | 3 | 6 | 0.000271216 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_809 | 3 | 5 | 0.0000612805 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_127 | 6 | 13 | 0.000000000000535825 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 5 | CH_lsa_422 | 4 | 12 | 0.000000974378 |
| Manihot esculenta | Chromosome10 | 5 | CH_mes_385 | 3 | 3 | 0.00000254492 |
| Medicago truncatula | chr8 | 5 | CH_mtr_29 | 13 | 22 | 2.092e-33 |
| Medicago truncatula | chr3 | 5 | CH_mtr_826 | 3 | 3 | 0.0000102807 |
| Medicago truncatula | chr8 | 5 | CH_mtr_954 | 3 | 4 | 0.0000411047 |
| Quercus lobata | 3 | 5 | CH_qlo_287 | 8 | 40 | 0.00000000000000419575 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_477 | 4 | 6 | 0.0000000138063 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_864 | 3 | 4 | 0.0000108676 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_924 | 3 | 5 | 0.0000271616 |
| Selaginella moellendorffii | scaffold_44 | 5 | CH_smo_233 | 3 | 6 | 0.0000950826 |
| Selenicereus undatus | Scaffold_33676 | 5 | CH_sun_98 | 3 | 3 | 0.000000665309 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_256 | 4 | 5 | 0.0000000140202 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_5 | 12 | 18 | 1.0812e-29 |
| Acer truncatum | chr3 | 6 | CH_acertr_536 | 3 | 11 | 0.000068792 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_414 | 4 | 4 | 0.00000000735736 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_893 | 3 | 4 | 0.0000531108 |
| Brassica napus | A07 | 6 | CH_bna_239 | 4 | 4 | 0.000000000392833 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_76 | 5 | 8 | 0.0000000000091122 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_133 | 5 | 11 | 0.000000000996303 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_356 | 3 | 4 | 0.0000294803 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_36 | 7 | 10 | 5.86815e-17 |
| Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_267 | 3 | 3 | 0.00000146619 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_235 | 6 | 6 | 1.23775e-16 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_630 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_631 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm13 | 6 | CH_gma_279 | 4 | 4 | 0.0000000149926 |
| Glycine max | Gm07 | 6 | CH_gma_280 | 4 | 4 | 0.0000000149926 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_363 | 3 | 4 | 0.00000965447 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_147 | 6 | 11 | 0.0000000000000903015 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_622 | 3 | 3 | 0.00000396695 |
| Lotus japonicus | chr6 | 6 | CH_lja_494 | 3 | 6 | 0.000271216 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_809 | 3 | 5 | 0.0000612805 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_127 | 6 | 13 | 0.000000000000535825 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 6 | CH_lsa_422 | 4 | 12 | 0.000000974378 |
| Manihot esculenta | Chromosome10 | 6 | CH_mes_385 | 3 | 3 | 0.00000254492 |
| Medicago truncatula | chr8 | 6 | CH_mtr_29 | 13 | 22 | 2.092e-33 |
| Medicago truncatula | chr3 | 6 | CH_mtr_826 | 3 | 3 | 0.0000102807 |
| Medicago truncatula | chr8 | 6 | CH_mtr_954 | 3 | 4 | 0.0000411047 |
| Quercus lobata | 3 | 6 | CH_qlo_287 | 8 | 40 | 0.00000000000000419575 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_477 | 4 | 6 | 0.0000000138063 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_864 | 3 | 4 | 0.0000108676 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_924 | 3 | 5 | 0.0000271616 |
| Selaginella moellendorffii | scaffold_44 | 6 | CH_smo_233 | 3 | 6 | 0.0000950826 |
| Selenicereus undatus | Scaffold_33676 | 6 | CH_sun_98 | 3 | 3 | 0.000000665309 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_256 | 4 | 5 | 0.0000000140202 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_5 | 12 | 18 | 1.0812e-29 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |