Functional clusters

Information

  • Type InterPro
  • Description Twinkle-like protein

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 5 CH_acertr_774 2 2 0.000211491
Arabidopsis lyrata scaffold_1 5 CH_aly_508 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 5 CH_arhy_540 3 4 0.000000301141
Arabidopsis thaliana Chr1 5 CH_ath_414 2 3 0.0000859463
Capsicum annuum PGAv.1.6.scaffold39 5 CH_can_707 2 2 0.000247831
Corylus avellana 5 5 CH_cav_649 2 2 0.000230008
Citrus clementina scaffold_2 5 CH_ccl_546 2 2 0.0000820311
Citrullus lanatus CG_Chr03 5 CH_cla_324 2 4 0.000532222
Capsella rubella scaffold_1 5 CH_cru_633 2 5 0.000731074
Cucumis sativus L. chr1 5 CH_csa_385 2 3 0.000250417
Daucus carota DCARv2_Chr2 5 CH_dca_544 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_639 2 2 0.000134617
Erythranthe guttata scaffold_13 5 CH_egut_508 2 2 0.0000728147
Fragaria vesca Fvb3 5 CH_fve_615 2 3 0.000176725
Gossypium hirsutum D05 5 CH_ghi_870 2 2 0.0000801047
Glycine max Gm09 5 CH_gma_786 2 3 0.000341591
Lupinus albus Lalb_Chr18 5 CH_lal_530 2 2 0.000157447
Lotus japonicus chr6 5 CH_lja_581 2 5 0.000715001
Lonicera japonica GWHAAZE00000001 5 CH_lonja_389 3 3 0.0000000215197
Malus domestica Chr05 5 CH_mdo_1192 2 3 0.00034128
Physcomitrium patens Chr21 5 CH_ppa_261 2 2 0.000183818
Prunus persica Pp04 5 CH_ppe_665 2 3 0.00022378
Pisum sativum chr1LG6 5 CH_psa_520 2 3 0.000156486
Populus trichocarpa Chr01 5 CH_ptr_544 2 2 0.0000578001
Phaseolus vulgaris Chr06 5 CH_pvu_515 2 3 0.00022041
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_1214 2 4 0.000239182
Rhododendron simsii chr13 5 CH_rsi_687 2 2 0.0000645307
Salvia bowleyana GWHASIU00000004 5 CH_sbo_199 4 13 0.000000000201997
Salix brachista GWHAAZH00000016 5 CH_sbr_103 4 4 0.000000000000750711
Sechium edule LG01 5 CH_sed_328 2 2 0.0000713419
Sequoiadendron giganteum chr7 5 CH_sgi_930 3 3 0.0000000142393
Solanum lycopersicum SL4.0ch02 5 CH_sly_728 2 2 0.000176082
Theobroma cacao Chromosome_6 5 CH_tca_539 2 2 0.0000732386
Utricularia gibba unitig_92 5 CH_ugi_221 3 46 0.00015302
Vitis vinifera chr10 5 CH_vvi_562 3 33 0.000189026
Acer truncatum chr10 6 CH_acertr_774 2 2 0.000211491
Arabidopsis lyrata scaffold_1 6 CH_aly_508 2 3 0.000198007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 6 CH_arhy_540 3 4 0.000000301141
Arabidopsis thaliana Chr1 6 CH_ath_414 2 3 0.0000859463
Capsicum annuum PGAv.1.6.scaffold39 6 CH_can_707 2 2 0.000247831
Corylus avellana 5 6 CH_cav_649 2 2 0.000230008
Citrus clementina scaffold_2 6 CH_ccl_546 2 2 0.0000820311
Citrullus lanatus CG_Chr03 6 CH_cla_324 2 4 0.000532222
Cucumis melo chr12 6 CH_cme_344 2 3 0.000200127
Capsella rubella scaffold_1 6 CH_cru_633 2 5 0.000731074
Cucumis sativus L. chr1 6 CH_csa_385 2 3 0.000250417
Daucus carota DCARv2_Chr2 6 CH_dca_544 2 2 0.000191333
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_639 2 2 0.000134617
Erythranthe guttata scaffold_13 6 CH_egut_508 2 2 0.0000728147
Fragaria x ananassa Fvb3-2 6 CH_fan_576 3 13 0.00000513904
Fragaria vesca Fvb3 6 CH_fve_615 2 3 0.000176725
Gossypium hirsutum D05 6 CH_ghi_870 2 2 0.0000801047
Glycine max Gm09 6 CH_gma_786 2 3 0.000341591
Lupinus albus Lalb_Chr18 6 CH_lal_530 2 2 0.000157447
Lotus japonicus chr6 6 CH_lja_581 2 5 0.000715001
Lonicera japonica GWHAAZE00000001 6 CH_lonja_389 3 3 0.0000000215197
Malus domestica Chr05 6 CH_mdo_1192 2 3 0.00034128
Physcomitrium patens Chr21 6 CH_ppa_261 2 2 0.000183818
Prunus persica Pp04 6 CH_ppe_665 2 3 0.00022378
Pisum sativum chr1LG6 6 CH_psa_520 2 3 0.000156486
Populus trichocarpa Chr01 6 CH_ptr_544 2 2 0.0000578001
Phaseolus vulgaris Chr06 6 CH_pvu_515 2 3 0.00022041
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_1214 2 4 0.000239182
Rhododendron simsii chr13 6 CH_rsi_687 2 2 0.0000645307
Salvia bowleyana GWHASIU00000004 6 CH_sbo_199 4 13 0.000000000201997
Salix brachista GWHAAZH00000016 6 CH_sbr_103 4 4 0.000000000000750711
Sechium edule LG01 6 CH_sed_328 2 2 0.0000713419
Sequoiadendron giganteum chr7 6 CH_sgi_930 3 3 0.0000000142393
Solanum lycopersicum SL4.0ch02 6 CH_sly_728 2 2 0.000176082
Theobroma cacao Chromosome_6 6 CH_tca_539 2 2 0.0000732386
Utricularia gibba unitig_92 6 CH_ugi_221 3 46 0.00015302
Vitis vinifera chr10 6 CH_vvi_562 3 33 0.000189026

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001