Functional clusters
Information
- Type InterPro
- Description Fibronectin type III-like domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Citrus clementina | scaffold_2 | 5 | CH_ccl_388 | 3 | 3 | 0.00000166552 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_359 | 3 | 6 | 0.00000420071 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_214 | 6 | 6 | 2.65231e-17 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_396 | 3 | 3 | 0.00000313221 |
| Manihot esculenta | Chromosome02 | 5 | CH_mes_643 | 3 | 10 | 0.000375002 |
| Medicago truncatula | chr5 | 5 | CH_mtr_465 | 4 | 9 | 0.0000000129684 |
| Nicotiana tabacum | Nitab4.5_0000469 | 5 | CH_nta_99 | 3 | 3 | 0.000000361222 |
| Olea europaea | chr7 | 5 | CH_oeu_168 | 3 | 3 | 0.000000359022 |
| Quercus lobata | 5 | 5 | CH_qlo_1196 | 3 | 5 | 0.0000455496 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_366 | 3 | 3 | 0.00000173889 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_513 | 3 | 7 | 0.0000608018 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_334 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_298 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_230 | 4 | 6 | 0.000000000762898 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_223 | 4 | 4 | 0.00000000214516 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_392 | 4 | 14 | 0.00000213899 |
| Theobroma cacao | Chromosome_10 | 5 | CH_tca_500 | 3 | 5 | 0.0000450229 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_275 | 3 | 3 | 0.00000108804 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_388 | 3 | 3 | 0.00000166552 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_359 | 3 | 6 | 0.00000420071 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_214 | 6 | 6 | 2.65231e-17 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_396 | 3 | 3 | 0.00000313221 |
| Manihot esculenta | Chromosome02 | 6 | CH_mes_643 | 3 | 10 | 0.000375002 |
| Medicago truncatula | chr5 | 6 | CH_mtr_465 | 4 | 9 | 0.0000000129684 |
| Nicotiana tabacum | Nitab4.5_0000469 | 6 | CH_nta_99 | 3 | 3 | 0.000000361222 |
| Olea europaea | chr7 | 6 | CH_oeu_168 | 3 | 3 | 0.000000359022 |
| Quercus lobata | 5 | 6 | CH_qlo_1196 | 3 | 5 | 0.0000455496 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_366 | 3 | 3 | 0.00000173889 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_513 | 3 | 7 | 0.0000608018 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_334 | 3 | 3 | 0.000000289388 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_298 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_230 | 4 | 6 | 0.000000000762898 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_223 | 4 | 4 | 0.00000000214516 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_392 | 4 | 14 | 0.00000213899 |
| Theobroma cacao | Chromosome_10 | 6 | CH_tca_500 | 3 | 5 | 0.0000450229 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_275 | 3 | 3 | 0.00000108804 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |