Functional clusters

Information

  • Type InterPro
  • Description Arsenite methyltransferase-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 5 CH_aar_289 2 2 0.0000912326
Acer truncatum chr4 5 CH_acertr_719 2 3 0.000211484
Arabidopsis lyrata scaffold_3 5 CH_aly_236 3 7 0.000000228698
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 5 CH_arhy_38 10 11 6.59434e-32
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 5 CH_arhy_82 8 12 1.47043e-22
Arabidopsis thaliana Chr3 5 CH_ath_55 5 15 0.0000000000000151719
Brassica carinata ChrC06 5 CH_bca_1085 3 10 0.0000135645
Brassica carinata ChrB06 5 CH_bca_1162 3 12 0.0000248645
Brassica napus C07 5 CH_bna_170 5 15 0.0000000000116676
Brassica napus C01 5 CH_bna_851 3 8 0.000016199
Brassica napus A07 5 CH_bna_969 3 11 0.0000477149
Brassica oleracea C7 5 CH_bol_100 5 22 0.0000000000283742
Brassica rapa A07 5 CH_bra_55 5 16 0.00000000000622769
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_150 4 29 0.0000000403988
Camellia sinensis var. sinensis Chr9 5 CH_camsi_1186 2 4 0.000275116
Capsicum annuum PGAv.1.6.scaffold220 5 CH_can_101 6 8 0.0000000000000121279
Corylus avellana 9 5 CH_cav_205 3 4 0.0000000352693
Citrus clementina scaffold_9 5 CH_ccl_171 4 5 0.0000000000414017
Ceratophyllum demersum 6 5 CH_cde_67 3 4 0.0000000374266
Carpinus fangiana Cfa06 5 CH_cfa_418 2 2 0.0000757346
Cardamine hirsuta Chr3 5 CH_chi_505 2 2 0.0000691204
Carya illinoinensis Chr01 5 CH_cil_120 5 6 0.0000000000000836934
Citrullus lanatus CG_Chr06 5 CH_cla_124 3 3 0.000000661086
Citrullus lanatus CG_Chr07 5 CH_cla_174 3 7 0.0000231185
Carica papaya supercontig_44 5 CH_cpa_359 2 2 0.0000950661
Capsella rubella scaffold_3 5 CH_cru_517 2 3 0.000219338
Cucumis sativus L. chr2 5 CH_csa_137 3 3 0.0000000104528
Eucalyptus grandis Chr08 5 CH_egr_435 4 7 0.0000000000210508
Eutrema salsugineum scaffold_13 5 CH_esa_87 4 6 0.0000000000198718
Fragaria vesca Fvb7 5 CH_fve_384 4 40 0.000000838537
Gossypium hirsutum A02 5 CH_ghi_561 3 3 0.000000727242
Gossypium raimondii Chr05 5 CH_gra_674 2 2 0.00080416
Helianthus annuus HanXRQChr12 5 CH_han_201 6 79 0.00000000000370915
Hydrangea macrophylla Hma1.2p1_0385F.1 5 CH_hma_654 2 2 0.000666519
Hydrangea macrophylla Hma1.2p1_0267F.1 5 CH_hma_655 2 2 0.000666519
Lonicera japonica GWHAAZE00000006 5 CH_lonja_763 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_75 6 11 2.6108e-17
Magnolia biondii Chr07 5 CH_mbi_284 3 3 0.00000000353808
Manihot esculenta Chromosome03 5 CH_mes_44 8 8 4.49008e-26
Oryza sativa ssp. japonica chr12 5 CH_osa_592 2 2 0.000158437
Petunia axillaris Peaxi162Scf00033 5 CH_pax_219 3 3 0.00000025988
Populus trichocarpa Chr10 5 CH_ptr_93 5 5 5.02346e-16
Quercus lobata 6 5 CH_qlo_235 6 15 4.13106e-17
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_220 6 19 0.000000000000105306
Rhododendron simsii chr04 5 CH_rsi_199 4 5 0.00000000000403105
Salvia bowleyana GWHASIU00000004 5 CH_sbo_81 7 21 2.92266e-18
Salix brachista GWHAAZH00000008 5 CH_sbr_265 3 3 0.000000208471
Simmondsia chinensis GWHAASQ00000013 5 CH_sci_209 3 15 0.00000494531
Sechium edule LG06 5 CH_sed_409 2 2 0.000214026
Sequoiadendron giganteum chr8 5 CH_sgi_174 7 12 8.33806e-22
Solanum lycopersicum SL4.0ch09 5 CH_sly_957 2 2 0.000880411
Solanum lycopersicum SL4.0ch04 5 CH_sly_958 2 2 0.000880411
Solanum lycopersicum SL4.0ch03 5 CH_sly_959 2 2 0.000880411
Schrenkiella parvula ch3-1 5 CH_spa_47 4 7 0.0000000000512478
Solanum pennellii Spenn-ch09 5 CH_spe_263 3 3 0.0000000593529
Solanum pennellii Spenn-ch04 5 CH_spe_858 2 2 0.000667186
Solanum tuberosum ST4.03ch04 5 CH_stu_792 2 2 0.000307472
Selenicereus undatus Scaffold_19641 5 CH_sun_1 12 14 8.26612e-38
Theobroma cacao Chromosome_4 5 CH_tca_28 8 9 2.88589e-25
Tarenaya hassleriana NW_010964923.1 5 CH_tha_40 4 4 0.0000000000153356
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_153 3 3 0.0000000129529
Vitis vinifera chr5 5 CH_vvi_670 2 4 0.000456343
Aethionema arabicum LG-8 6 CH_aar_289 2 2 0.0000912326
Acer truncatum chr4 6 CH_acertr_719 2 3 0.000211484
Arabidopsis lyrata scaffold_3 6 CH_aly_236 3 7 0.000000228698
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 6 CH_arhy_38 10 11 6.59434e-32
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 6 CH_arhy_82 8 12 1.47043e-22
Arabidopsis thaliana Chr3 6 CH_ath_55 5 15 0.0000000000000151719
Brassica carinata ChrC06 6 CH_bca_1085 3 10 0.0000135645
Brassica carinata ChrB06 6 CH_bca_1162 3 12 0.0000248645
Brassica napus C07 6 CH_bna_170 5 15 0.0000000000116676
Brassica napus C01 6 CH_bna_851 3 8 0.000016199
Brassica napus A07 6 CH_bna_969 3 11 0.0000477149
Brassica oleracea C7 6 CH_bol_100 5 22 0.0000000000283742
Brassica rapa A07 6 CH_bra_55 5 16 0.00000000000622769
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_150 4 29 0.0000000403988
Camellia sinensis var. sinensis Chr9 6 CH_camsi_1186 2 4 0.000275116
Capsicum annuum PGAv.1.6.scaffold220 6 CH_can_101 6 8 0.0000000000000121279
Corylus avellana 9 6 CH_cav_205 3 4 0.0000000352693
Citrus clementina scaffold_9 6 CH_ccl_171 4 5 0.0000000000414017
Ceratophyllum demersum 6 6 CH_cde_67 3 4 0.0000000374266
Carpinus fangiana Cfa06 6 CH_cfa_418 2 2 0.0000757346
Cardamine hirsuta Chr3 6 CH_chi_505 2 2 0.0000691204
Carya illinoinensis Chr01 6 CH_cil_120 5 6 0.0000000000000836934
Citrullus lanatus CG_Chr06 6 CH_cla_124 3 3 0.000000661086
Citrullus lanatus CG_Chr07 6 CH_cla_174 3 7 0.0000231185
Cucumis melo chr05 6 CH_cme_113 4 8 0.00000000218137
Carica papaya supercontig_44 6 CH_cpa_359 2 2 0.0000950661
Capsella rubella scaffold_3 6 CH_cru_517 2 3 0.000219338
Cucumis sativus L. chr2 6 CH_csa_137 3 3 0.0000000104528
Eucalyptus grandis Chr08 6 CH_egr_435 4 7 0.0000000000210508
Eutrema salsugineum scaffold_13 6 CH_esa_87 4 6 0.0000000000198718
Fragaria vesca Fvb7 6 CH_fve_384 4 40 0.000000838537
Gossypium hirsutum A02 6 CH_ghi_561 3 3 0.000000727242
Gossypium raimondii Chr05 6 CH_gra_674 2 2 0.00080416
Helianthus annuus HanXRQChr12 6 CH_han_201 6 79 0.00000000000370915
Hydrangea macrophylla Hma1.2p1_0385F.1 6 CH_hma_654 2 2 0.000666519
Hydrangea macrophylla Hma1.2p1_0267F.1 6 CH_hma_655 2 2 0.000666519
Lonicera japonica GWHAAZE00000006 6 CH_lonja_763 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_75 6 11 2.6108e-17
Magnolia biondii Chr07 6 CH_mbi_284 3 3 0.00000000353808
Manihot esculenta Chromosome03 6 CH_mes_44 8 8 4.49008e-26
Oryza sativa ssp. japonica chr12 6 CH_osa_592 2 2 0.000158437
Petunia axillaris Peaxi162Scf00033 6 CH_pax_219 3 3 0.00000025988
Populus trichocarpa Chr10 6 CH_ptr_93 5 5 5.02346e-16
Quercus lobata 6 6 CH_qlo_235 6 15 4.13106e-17
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_220 6 19 0.000000000000105306
Rhododendron simsii chr04 6 CH_rsi_199 4 5 0.00000000000403105
Salvia bowleyana GWHASIU00000004 6 CH_sbo_81 7 21 2.92266e-18
Salix brachista GWHAAZH00000008 6 CH_sbr_265 3 3 0.000000208471
Simmondsia chinensis GWHAASQ00000013 6 CH_sci_209 3 15 0.00000494531
Sechium edule LG06 6 CH_sed_409 2 2 0.000214026
Sequoiadendron giganteum chr8 6 CH_sgi_174 7 12 8.33806e-22
Solanum lycopersicum SL4.0ch09 6 CH_sly_957 2 2 0.000880411
Solanum lycopersicum SL4.0ch04 6 CH_sly_958 2 2 0.000880411
Solanum lycopersicum SL4.0ch03 6 CH_sly_959 2 2 0.000880411
Schrenkiella parvula ch3-1 6 CH_spa_47 4 7 0.0000000000512478
Solanum pennellii Spenn-ch09 6 CH_spe_263 3 3 0.0000000593529
Solanum pennellii Spenn-ch04 6 CH_spe_858 2 2 0.000667186
Solanum tuberosum ST4.03ch04 6 CH_stu_792 2 2 0.000307472
Selenicereus undatus Scaffold_19641 6 CH_sun_1 12 14 8.26612e-38
Theobroma cacao Chromosome_4 6 CH_tca_28 8 9 2.88589e-25
Tarenaya hassleriana NW_010964923.1 6 CH_tha_40 4 4 0.0000000000153356
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_153 3 3 0.0000000129529
Vitis vinifera chr5 6 CH_vvi_670 2 4 0.000456343

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001