Functional clusters

Information

  • Type InterPro
  • Description ABC transporter A

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 5 CH_aar_146 4 9 0.0000000945934
Aethionema arabicum LG-4 5 CH_aar_195 3 3 0.00000206013
Acer truncatum chr9 5 CH_acertr_13 8 8 3.51079e-24
Arabidopsis lyrata scaffold_5 5 CH_aly_23 7 7 2.23589e-20
Arabidopsis lyrata scaffold_8 5 CH_aly_66 6 10 0.0000000000000177629
Avicennia marina ScioBoG_3703_HRSCAF_3719 5 CH_ama_42 3 3 0.000000111518
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 5 CH_amhyb_471 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 5 CH_amhyb_472 2 2 0.000841751
Arabidopsis thaliana Chr5 5 CH_ath_138 4 7 0.00000000122183
Arabidopsis thaliana Chr3 5 CH_ath_25 7 12 2.73087e-20
Amborella trichopoda AmTr_v1.0_scaffold00078 5 CH_atr_98 4 5 0.0000000000376021
Brassica carinata ChrB01 5 CH_bca_1256 3 6 0.0000556194
Brassica carinata ChrC06 5 CH_bca_144 5 6 0.00000000000133879
Brassica carinata ChrC06 5 CH_bca_404 4 6 0.0000000120409
Brassica carinata ChrC01 5 CH_bca_885 3 3 0.00000278287
Brassica carinata ChrC09 5 CH_bca_886 3 3 0.00000278287
Brassica carinata ChrC09 5 CH_bca_887 3 3 0.00000278287
Brassica napus C01 5 CH_bna_1056 3 5 0.0000951539
Brassica napus A01 5 CH_bna_14 11 22 3.87703e-27
Brassica napus A03 5 CH_bna_17 10 17 4.56842e-26
Brassica napus C01 5 CH_bna_319 4 4 0.00000000406504
Brassica napus C03 5 CH_bna_320 4 4 0.00000000406504
Brassica napus A06 5 CH_bna_796 3 3 0.00000952166
Brassica oleracea C1 5 CH_bol_131 4 5 0.000000000627044
Brassica oleracea C3 5 CH_bol_156 4 5 0.00000000313447
Brassica oleracea C7 5 CH_bol_157 4 5 0.00000000313447
Brassica oleracea C1 5 CH_bol_574 3 7 0.0000745305
Brassica rapa A03 5 CH_bra_105 4 5 0.00000000282432
Brassica rapa A06 5 CH_bra_233 3 3 0.00000188
Brassica rapa A01 5 CH_bra_49 6 22 0.00000000000301986
Beta vulgaris Chr5_EL10_PGA_scaffold2 5 CH_bvu_106 4 5 0.000000000595839
Camellia sinensis var. sinensis Chr15 5 CH_camsi_9 14 17 3.33871e-42
Cannabis sativa NC_044372.1 5 CH_cansat_49 5 5 8.36782e-16
Capsicum annuum PGAv.1.6.scaffold628 5 CH_can_173 4 4 0.000000000213133
Corylus avellana 4 5 CH_cav_141 4 6 0.000000000304183
Coffea canephora chr4 5 CH_ccan_178 4 34 0.00000011408
Coffea canephora chr4 5 CH_ccan_2 9 41 7.02171e-26
Citrus clementina scaffold_3 5 CH_ccl_656 2 2 0.000246093
Ceratophyllum demersum 3 5 CH_cde_98 3 3 0.000000327496
Carpinus fangiana Cfa08 5 CH_cfa_108 4 4 0.00000000000651664
Cardamine hirsuta Chr5 5 CH_chi_38 7 7 1.03109e-21
Carya illinoinensis Chr12 5 CH_cil_757 2 2 0.000371897
Citrullus lanatus CG_Chr04 5 CH_cla_130 3 5 0.000000944273
Carica papaya supercontig_107 5 CH_cpa_356 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1675 5 CH_cqu_208 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3422 5 CH_cqu_209 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3093 5 CH_cqu_589 3 5 0.0000188494
Chenopodium quinoa C_Quinoa_Scaffold_4082 5 CH_cqu_701 3 8 0.000105476
Capsella rubella scaffold_8 5 CH_cru_353 3 5 0.00000673333
Capsella rubella scaffold_5 5 CH_cru_79 5 5 0.0000000000000270124
Cucumis sativus L. chr1 5 CH_csa_459 2 2 0.000500856
Daucus carota DCARv2_Chr6 5 CH_dca_611 2 2 0.000382665
Davidia involucrata GWHABJS00000019 5 CH_din_39 6 6 4.92926e-20
Durio zibethinus NW_019168381.1 5 CH_dzi_492 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_28 6 7 2.00607e-19
Eucalyptus grandis Chr11 5 CH_egr_432 4 5 0.0000000000150368
Erythranthe guttata scaffold_9 5 CH_egut_41 8 12 1.52371e-23
Eutrema salsugineum scaffold_16 5 CH_esa_37 6 6 2.66278e-17
Fragaria vesca Fvb5 5 CH_fve_367 3 3 0.000000437284
Gossypium hirsutum A12 5 CH_ghi_296 4 6 0.000000000282668
Gossypium hirsutum D12 5 CH_ghi_643 3 6 0.00000352827
Hydrangea macrophylla Hma1.2p1_0104F.1 5 CH_hma_431 2 2 0.000111086
Lupinus albus Lalb_Chr13 5 CH_lal_81 4 4 0.0000000000151798
Lotus japonicus chr1 5 CH_lja_83 4 5 0.000000000191961
Lonicera japonica GWHAAZE00000005 5 CH_lonja_388 3 3 0.0000000215197
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_145 5 15 0.00000000000329974
Magnolia biondii Chr01 5 CH_mbi_103 5 6 0.00000000000000525774
Malus domestica Chr00 5 CH_mdo_1421 2 2 0.000796344
Manihot esculenta Chromosome06 5 CH_mes_589 2 2 0.000183189
Medicago truncatula chr4 5 CH_mtr_121 6 8 1.54902e-17
Nicotiana tabacum Nitab4.5_0000785 5 CH_nta_120 3 4 0.00000144463
Nicotiana tabacum Nitab4.5_0000269 5 CH_nta_98 3 3 0.000000361222
Olea europaea chr18 5 CH_oeu_543 2 2 0.000320273
Oryza sativa ssp. japonica chr08 5 CH_osa_269 3 3 0.000000146433
Petunia axillaris Peaxi162Scf00009 5 CH_pax_252 3 3 0.000000623712
Petunia axillaris Peaxi162Scf00013 5 CH_pax_281 3 4 0.00000249436
Punica granatum NC_045134.1 5 CH_pgr_260 3 4 0.000000675585
Prunus persica Pp05 5 CH_ppe_401 3 4 0.00000116844
Populus trichocarpa Chr12 5 CH_ptr_802 2 2 0.000867002
Populus trichocarpa Chr15 5 CH_ptr_803 2 2 0.000867002
Phaseolus vulgaris Chr09 5 CH_pvu_617 2 2 0.000440836
Quercus lobata 10 5 CH_qlo_59 9 10 7.16074e-30
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_691 3 4 0.000000800904
Rhododendron simsii chr12 5 CH_rsi_428 3 3 0.000000218628
Salvia bowleyana GWHASIU00000003 5 CH_sbo_285 4 26 0.0000000632841
Salix brachista GWHAAZH00000015 5 CH_sbr_122 4 4 0.0000000000112607
Salix brachista GWHAAZH00000012 5 CH_sbr_705 2 2 0.000945209
Simmondsia chinensis GWHAASQ00000021 5 CH_sci_128 3 3 0.000000108744
Sechium edule LG01 5 CH_sed_506 2 2 0.000713419
Sechium edule LG08 5 CH_sed_507 2 2 0.000713419
Sequoiadendron giganteum chr3 5 CH_sgi_159 7 8 6.73834e-23
Solanum lycopersicum SL4.0ch06 5 CH_sly_105 5 5 0.0000000000000112172
Solanum lycopersicum SL4.0ch03 5 CH_sly_407 3 4 0.00000173605
Selaginella moellendorffii scaffold_13 5 CH_smo_166 3 6 0.0000146373
Schrenkiella parvula ch5-1 5 CH_spa_25 5 5 0.0000000000000726462
Schrenkiella parvula ch2-4 5 CH_spa_68 4 5 0.00000000153727
Solanum pennellii Spenn-ch06 5 CH_spe_116 4 4 0.000000000033265
Solanum pennellii Spenn-ch03 5 CH_spe_351 3 4 0.000000997006
Solanum tuberosum ST4.03ch06 5 CH_stu_321 3 3 0.0000000393922
Selenicereus undatus Scaffold_33678 5 CH_sun_394 2 2 0.000726639
Trochodendron aralioides group0 5 CH_tar_57 5 5 0.0000000000000122793
Tarenaya hassleriana NW_010966459.1 5 CH_tha_301 2 2 0.000419082
Tripterygium wilfordii NC_052246.1 5 CH_twi_533 2 2 0.00083626
Tripterygium wilfordii NC_052251.1 5 CH_twi_534 2 2 0.00083626
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_262 3 3 0.00000072536
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_329 3 5 0.0000072504
Vigna mungo CM024074.1 5 CH_vmu_642 2 2 0.000969211
Vigna mungo CM024072.1 5 CH_vmu_643 2 2 0.000969211
Vanilla planifolia CM028159.1 5 CH_vpl_64 4 7 0.000000000211759
Aethionema arabicum LG-6 6 CH_aar_146 4 9 0.0000000945934
Aethionema arabicum LG-4 6 CH_aar_195 3 3 0.00000206013
Acer truncatum chr9 6 CH_acertr_13 8 8 3.51079e-24
Arabidopsis lyrata scaffold_5 6 CH_aly_23 7 7 2.23589e-20
Arabidopsis lyrata scaffold_8 6 CH_aly_66 6 10 0.0000000000000177629
Avicennia marina ScioBoG_3703_HRSCAF_3719 6 CH_ama_42 3 3 0.000000111518
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 6 CH_amhyb_471 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 6 CH_amhyb_472 2 2 0.000841751
Arabidopsis thaliana Chr5 6 CH_ath_138 4 7 0.00000000122183
Arabidopsis thaliana Chr3 6 CH_ath_25 7 12 2.73087e-20
Amborella trichopoda AmTr_v1.0_scaffold00078 6 CH_atr_98 4 5 0.0000000000376021
Brassica carinata ChrB01 6 CH_bca_1256 3 6 0.0000556194
Brassica carinata ChrC06 6 CH_bca_144 5 6 0.00000000000133879
Brassica carinata ChrC06 6 CH_bca_404 4 6 0.0000000120409
Brassica carinata ChrC01 6 CH_bca_885 3 3 0.00000278287
Brassica carinata ChrC09 6 CH_bca_886 3 3 0.00000278287
Brassica carinata ChrC09 6 CH_bca_887 3 3 0.00000278287
Brassica napus C01 6 CH_bna_1056 3 5 0.0000951539
Brassica napus A01 6 CH_bna_14 11 22 3.87703e-27
Brassica napus A03 6 CH_bna_17 10 17 4.56842e-26
Brassica napus C01 6 CH_bna_319 4 4 0.00000000406504
Brassica napus C03 6 CH_bna_320 4 4 0.00000000406504
Brassica napus A06 6 CH_bna_796 3 3 0.00000952166
Brassica oleracea C1 6 CH_bol_131 4 5 0.000000000627044
Brassica oleracea C3 6 CH_bol_156 4 5 0.00000000313447
Brassica oleracea C7 6 CH_bol_157 4 5 0.00000000313447
Brassica oleracea C1 6 CH_bol_574 3 7 0.0000745305
Brassica rapa A03 6 CH_bra_105 4 5 0.00000000282432
Brassica rapa A06 6 CH_bra_233 3 3 0.00000188
Brassica rapa A01 6 CH_bra_49 6 22 0.00000000000301986
Beta vulgaris Chr5_EL10_PGA_scaffold2 6 CH_bvu_106 4 5 0.000000000595839
Camellia sinensis var. sinensis Chr15 6 CH_camsi_9 14 17 3.33871e-42
Cannabis sativa NC_044372.1 6 CH_cansat_49 5 5 8.36782e-16
Capsicum annuum PGAv.1.6.scaffold628 6 CH_can_173 4 4 0.000000000213133
Corylus avellana 4 6 CH_cav_141 4 6 0.000000000304183
Coffea canephora chr4 6 CH_ccan_178 4 34 0.00000011408
Coffea canephora chr4 6 CH_ccan_2 9 41 7.02171e-26
Citrus clementina scaffold_3 6 CH_ccl_656 2 2 0.000246093
Ceratophyllum demersum 3 6 CH_cde_98 3 3 0.000000327496
Carpinus fangiana Cfa08 6 CH_cfa_108 4 4 0.00000000000651664
Cardamine hirsuta Chr5 6 CH_chi_38 7 7 1.03109e-21
Carya illinoinensis Chr12 6 CH_cil_757 2 2 0.000371897
Citrullus lanatus CG_Chr04 6 CH_cla_130 3 5 0.000000944273
Cucumis melo chr02 6 CH_cme_427 2 2 0.000400267
Carica papaya supercontig_107 6 CH_cpa_356 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_1675 6 CH_cqu_208 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3422 6 CH_cqu_209 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3093 6 CH_cqu_589 3 5 0.0000188494
Chenopodium quinoa C_Quinoa_Scaffold_4082 6 CH_cqu_701 3 8 0.000105476
Capsella rubella scaffold_8 6 CH_cru_353 3 5 0.00000673333
Capsella rubella scaffold_5 6 CH_cru_79 5 5 0.0000000000000270124
Cucumis sativus L. chr1 6 CH_csa_459 2 2 0.000500856
Daucus carota DCARv2_Chr6 6 CH_dca_611 2 2 0.000382665
Davidia involucrata GWHABJS00000019 6 CH_din_39 6 6 4.92926e-20
Durio zibethinus NW_019168381.1 6 CH_dzi_492 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_28 6 7 2.00607e-19
Eucalyptus grandis Chr11 6 CH_egr_432 4 5 0.0000000000150368
Erythranthe guttata scaffold_9 6 CH_egut_41 8 12 1.52371e-23
Eutrema salsugineum scaffold_16 6 CH_esa_37 6 6 2.66278e-17
Fragaria vesca Fvb5 6 CH_fve_367 3 3 0.000000437284
Gossypium hirsutum A12 6 CH_ghi_296 4 6 0.000000000282668
Gossypium hirsutum D12 6 CH_ghi_643 3 6 0.00000352827
Hydrangea macrophylla Hma1.2p1_0104F.1 6 CH_hma_431 2 2 0.000111086
Lupinus albus Lalb_Chr13 6 CH_lal_81 4 4 0.0000000000151798
Lotus japonicus chr1 6 CH_lja_83 4 5 0.000000000191961
Lonicera japonica GWHAAZE00000005 6 CH_lonja_388 3 3 0.0000000215197
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_145 5 15 0.00000000000329974
Magnolia biondii Chr01 6 CH_mbi_103 5 6 0.00000000000000525774
Malus domestica Chr00 6 CH_mdo_1421 2 2 0.000796344
Manihot esculenta Chromosome06 6 CH_mes_589 2 2 0.000183189
Medicago truncatula chr4 6 CH_mtr_121 6 8 1.54902e-17
Nicotiana tabacum Nitab4.5_0000785 6 CH_nta_120 3 4 0.00000144463
Nicotiana tabacum Nitab4.5_0000269 6 CH_nta_98 3 3 0.000000361222
Olea europaea chr18 6 CH_oeu_543 2 2 0.000320273
Oryza sativa ssp. japonica chr08 6 CH_osa_269 3 3 0.000000146433
Petunia axillaris Peaxi162Scf00009 6 CH_pax_252 3 3 0.000000623712
Petunia axillaris Peaxi162Scf00013 6 CH_pax_281 3 4 0.00000249436
Punica granatum NC_045134.1 6 CH_pgr_260 3 4 0.000000675585
Prunus persica Pp05 6 CH_ppe_401 3 4 0.00000116844
Populus trichocarpa Chr12 6 CH_ptr_802 2 2 0.000867002
Populus trichocarpa Chr15 6 CH_ptr_803 2 2 0.000867002
Phaseolus vulgaris Chr09 6 CH_pvu_617 2 2 0.000440836
Quercus lobata 10 6 CH_qlo_59 9 10 7.16074e-30
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_691 3 4 0.000000800904
Rhododendron simsii chr12 6 CH_rsi_428 3 3 0.000000218628
Salvia bowleyana GWHASIU00000003 6 CH_sbo_285 4 26 0.0000000632841
Salix brachista GWHAAZH00000015 6 CH_sbr_122 4 4 0.0000000000112607
Salix brachista GWHAAZH00000012 6 CH_sbr_705 2 2 0.000945209
Simmondsia chinensis GWHAASQ00000021 6 CH_sci_128 3 3 0.000000108744
Sechium edule LG01 6 CH_sed_506 2 2 0.000713419
Sechium edule LG08 6 CH_sed_507 2 2 0.000713419
Sequoiadendron giganteum chr3 6 CH_sgi_159 7 8 6.73834e-23
Solanum lycopersicum SL4.0ch06 6 CH_sly_105 5 5 0.0000000000000112172
Solanum lycopersicum SL4.0ch03 6 CH_sly_407 3 4 0.00000173605
Selaginella moellendorffii scaffold_13 6 CH_smo_166 3 6 0.0000146373
Schrenkiella parvula ch5-1 6 CH_spa_25 5 5 0.0000000000000726462
Schrenkiella parvula ch2-4 6 CH_spa_68 4 5 0.00000000153727
Solanum pennellii Spenn-ch06 6 CH_spe_116 4 4 0.000000000033265
Solanum pennellii Spenn-ch03 6 CH_spe_351 3 4 0.000000997006
Solanum tuberosum ST4.03ch06 6 CH_stu_321 3 3 0.0000000393922
Selenicereus undatus Scaffold_33678 6 CH_sun_394 2 2 0.000726639
Trochodendron aralioides group0 6 CH_tar_57 5 5 0.0000000000000122793
Tarenaya hassleriana NW_010966459.1 6 CH_tha_301 2 2 0.000419082
Tripterygium wilfordii NC_052246.1 6 CH_twi_533 2 2 0.00083626
Tripterygium wilfordii NC_052251.1 6 CH_twi_534 2 2 0.00083626
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_262 3 3 0.00000072536
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_329 3 5 0.0000072504
Vigna mungo CM024074.1 6 CH_vmu_642 2 2 0.000969211
Vigna mungo CM024072.1 6 CH_vmu_643 2 2 0.000969211
Vanilla planifolia CM028159.1 6 CH_vpl_64 4 7 0.000000000211759

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001