Functional clusters
Information
- Type InterPro
- Description Fatty acyl-CoA reductase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 5 | CH_aar_12 | 10 | 15 | 6.15708e-28 |
| Acer truncatum | chr3 | 5 | CH_acertr_30 | 6 | 6 | 1.09735e-18 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_104 | 8 | 9 | 1.92138e-20 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 5 | CH_arhy_835 | 3 | 3 | 0.0000218007 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_931 | 3 | 4 | 0.0000871583 |
| Brassica carinata | ChrC07 | 5 | CH_bca_310 | 4 | 4 | 0.00000000119916 |
| Brassica napus | C06 | 5 | CH_bna_674 | 4 | 16 | 0.00000268114 |
| Brassica napus | A09 | 5 | CH_bna_706 | 3 | 3 | 0.00000369001 |
| Brassica oleracea | C6 | 5 | CH_bol_325 | 4 | 15 | 0.000000853671 |
| Brassica oleracea | C4 | 5 | CH_bol_369 | 3 | 3 | 0.00000213146 |
| Capsicum annuum | PGAv.1.6.scaffold350 | 5 | CH_can_47 | 8 | 8 | 1.0428e-21 |
| Coffea canephora | chr1 | 5 | CH_ccan_277 | 3 | 60 | 0.00000713591 |
| Coffea canephora | chr6 | 5 | CH_ccan_382 | 2 | 2 | 0.0000425891 |
| Ceratophyllum demersum | 1 | 5 | CH_cde_232 | 2 | 2 | 0.0000789796 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_76 | 5 | 7 | 0.000000000000031092 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_353 | 3 | 3 | 0.00000260868 |
| Corchorus olitorius | AWUE01020342.1 | 5 | CH_col_166 | 2 | 2 | 0.000292099 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_119 | 6 | 11 | 0.00000000000000448016 |
| Lupinus albus | Lalb_Chr24 | 5 | CH_lal_256 | 3 | 3 | 0.000000908977 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_90 | 7 | 8 | 9.5941e-21 |
| Malus domestica | Chr12 | 5 | CH_mdo_565 | 3 | 3 | 0.000000785171 |
| Medicago truncatula | chr4 | 5 | CH_mtr_306 | 6 | 37 | 0.0000000000487824 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_263 | 3 | 4 | 0.00000229666 |
| Petunia axillaris | Peaxi162Scf00011 | 5 | CH_pax_317 | 3 | 3 | 0.00000719496 |
| Petunia axillaris | Peaxi162Scf00179 | 5 | CH_pax_318 | 3 | 3 | 0.00000719496 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_310 | 4 | 32 | 0.00000320224 |
| Papaver somniferum | NW_020624377.1 | 5 | CH_pso_281 | 6 | 33 | 0.000000000333499 |
| Populus trichocarpa | Chr09 | 5 | CH_ptr_360 | 3 | 3 | 0.00000042096 |
| Quercus lobata | 8 | 5 | CH_qlo_1503 | 3 | 6 | 0.000161646 |
| Quercus lobata | 1 | 5 | CH_qlo_161 | 8 | 11 | 3.73536e-20 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_114 | 7 | 21 | 0.0000000000000137955 |
| Simmondsia chinensis | GWHAASQ00000012 | 5 | CH_sci_29 | 7 | 17 | 6.99512e-17 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1891 | 3 | 4 | 0.0000577818 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1919 | 5 | 72 | 0.0000812822 |
| Solanum pennellii | Spenn-ch09 | 5 | CH_spe_328 | 3 | 3 | 0.000000489661 |
| Trochodendron aralioides | group2 | 5 | CH_tar_230 | 3 | 3 | 0.0000000540676 |
| Theobroma cacao | Chromosome_7 | 5 | CH_tca_229 | 4 | 5 | 0.0000000029164 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_431 | 5 | CH_tpr_26 | 7 | 13 | 2.0123e-17 |
| Utricularia gibba | unitig_27 | 5 | CH_ugi_18 | 4 | 4 | 0.0000000000580023 |
| Vitis vinifera | chr5 | 5 | CH_vvi_327 | 3 | 3 | 0.000000486007 |
| Zea mays | 1 | 5 | CH_zma_524 | 2 | 2 | 0.000766969 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_12 | 10 | 15 | 6.15708e-28 |
| Acer truncatum | chr3 | 6 | CH_acertr_30 | 6 | 6 | 1.09735e-18 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_104 | 8 | 9 | 1.92138e-20 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.16 | 6 | CH_arhy_835 | 3 | 3 | 0.0000218007 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_931 | 3 | 4 | 0.0000871583 |
| Brassica carinata | ChrC07 | 6 | CH_bca_310 | 4 | 4 | 0.00000000119916 |
| Brassica napus | C06 | 6 | CH_bna_674 | 4 | 16 | 0.00000268114 |
| Brassica napus | A09 | 6 | CH_bna_706 | 3 | 3 | 0.00000369001 |
| Brassica oleracea | C6 | 6 | CH_bol_325 | 4 | 15 | 0.000000853671 |
| Brassica oleracea | C4 | 6 | CH_bol_369 | 3 | 3 | 0.00000213146 |
| Capsicum annuum | PGAv.1.6.scaffold350 | 6 | CH_can_47 | 8 | 8 | 1.0428e-21 |
| Coffea canephora | chr1 | 6 | CH_ccan_277 | 3 | 60 | 0.00000713591 |
| Coffea canephora | chr6 | 6 | CH_ccan_382 | 2 | 2 | 0.0000425891 |
| Ceratophyllum demersum | 1 | 6 | CH_cde_232 | 2 | 2 | 0.0000789796 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_76 | 5 | 7 | 0.000000000000031092 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_353 | 3 | 3 | 0.00000260868 |
| Corchorus olitorius | AWUE01020342.1 | 6 | CH_col_166 | 2 | 2 | 0.000292099 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_119 | 6 | 11 | 0.00000000000000448016 |
| Lupinus albus | Lalb_Chr24 | 6 | CH_lal_256 | 3 | 3 | 0.000000908977 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_90 | 7 | 8 | 9.5941e-21 |
| Malus domestica | Chr12 | 6 | CH_mdo_565 | 3 | 3 | 0.000000785171 |
| Medicago truncatula | chr4 | 6 | CH_mtr_306 | 6 | 37 | 0.0000000000487824 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_263 | 3 | 4 | 0.00000229666 |
| Petunia axillaris | Peaxi162Scf00011 | 6 | CH_pax_317 | 3 | 3 | 0.00000719496 |
| Petunia axillaris | Peaxi162Scf00179 | 6 | CH_pax_318 | 3 | 3 | 0.00000719496 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_310 | 4 | 32 | 0.00000320224 |
| Papaver somniferum | NW_020624377.1 | 6 | CH_pso_281 | 6 | 33 | 0.000000000333499 |
| Populus trichocarpa | Chr09 | 6 | CH_ptr_360 | 3 | 3 | 0.00000042096 |
| Quercus lobata | 8 | 6 | CH_qlo_1503 | 3 | 6 | 0.000161646 |
| Quercus lobata | 1 | 6 | CH_qlo_161 | 8 | 11 | 3.73536e-20 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_114 | 7 | 21 | 0.0000000000000137955 |
| Simmondsia chinensis | GWHAASQ00000012 | 6 | CH_sci_29 | 7 | 17 | 6.99512e-17 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1891 | 3 | 4 | 0.0000577818 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1919 | 5 | 72 | 0.0000812822 |
| Solanum pennellii | Spenn-ch09 | 6 | CH_spe_328 | 3 | 3 | 0.000000489661 |
| Trochodendron aralioides | group2 | 6 | CH_tar_230 | 3 | 3 | 0.0000000540676 |
| Theobroma cacao | Chromosome_7 | 6 | CH_tca_229 | 4 | 5 | 0.0000000029164 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_431 | 6 | CH_tpr_26 | 7 | 13 | 2.0123e-17 |
| Utricularia gibba | unitig_27 | 6 | CH_ugi_18 | 4 | 4 | 0.0000000000580023 |
| Vitis vinifera | chr5 | 6 | CH_vvi_327 | 3 | 3 | 0.000000486007 |
| Zea mays | 1 | 6 | CH_zma_524 | 2 | 2 | 0.000766969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |