Functional clusters

Information

  • Type InterPro
  • Description PDZ-like domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr1 5 CH_camsi_1289 2 3 0.000412677
Cucumis sativus L. chr1 5 CH_csa_419 2 2 0.000250428
Helianthus annuus HanXRQChr09 5 CH_han_917 2 2 0.000115929
Manihot esculenta Chromosome01 5 CH_mes_588 2 2 0.000183189
Medicago truncatula chr3 5 CH_mtr_933 2 2 0.0000410863
Populus trichocarpa Chr04 5 CH_ptr_627 2 2 0.0001734
Rhododendron simsii chr10 5 CH_rsi_808 2 2 0.000193592
Salix brachista GWHAAZH00000004 5 CH_sbr_544 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000010 5 CH_sci_302 2 2 0.0000851426
Camellia sinensis var. sinensis Chr1 6 CH_camsi_1289 2 3 0.000412677
Cucumis sativus L. chr1 6 CH_csa_419 2 2 0.000250428
Helianthus annuus HanXRQChr09 6 CH_han_917 2 2 0.000115929
Manihot esculenta Chromosome01 6 CH_mes_588 2 2 0.000183189
Medicago truncatula chr3 6 CH_mtr_933 2 2 0.0000410863
Populus trichocarpa Chr04 6 CH_ptr_627 2 2 0.0001734
Rhododendron simsii chr10 6 CH_rsi_808 2 2 0.000193592
Salix brachista GWHAAZH00000004 6 CH_sbr_544 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000010 6 CH_sci_302 2 2 0.0000851426

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001