Functional clusters

Information

  • Type InterPro
  • Description PMR5 N-terminal domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 5 CH_acertr_295 4 4 0.000000142699
Actinidia chinensis Lachesis_group3 5 CH_ach_502 3 4 0.000490247
Arabidopsis lyrata scaffold_4 5 CH_aly_468 3 3 0.0000992027
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 5 CH_amhyb_279 3 3 0.000195822
Aquilegia oxysepala CHR02 5 CH_aox_366 3 3 0.000119068
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_1124 3 3 0.000377582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_1125 3 3 0.000377582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_533 5 10 0.000000287299
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_690 5 15 0.00000339891
Amborella trichopoda AmTr_v1.0_scaffold00023 5 CH_atr_443 3 4 0.000170061
Brassica napus A10 5 CH_bna_1188 3 3 0.000231313
Beta vulgaris Chr9_EL10_PGA_scaffold8 5 CH_bvu_21 12 31 1.76084e-20
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_441 3 3 0.000269752
Camellia sinensis var. sinensis Chr2 5 CH_camsi_1141 3 3 0.000212978
Capsicum annuum PGAv.1.6.scaffold497 5 CH_can_315 4 4 0.000000208752
Capsicum annuum PGAv.1.6.scaffold203 5 CH_can_611 3 3 0.000126337
Chara braunii BFEA01000003 5 CH_cbr_112 3 4 0.00000173806
Coffea canephora chr7 5 CH_ccan_121 4 10 0.00000000660386
Coffea canephora chr6 5 CH_ccan_581 3 18 0.000293736
Citrus clementina scaffold_3 5 CH_ccl_580 3 3 0.00011588
Carpinus fangiana Cfa03 5 CH_cfa_371 3 3 0.0000281865
Cardamine hirsuta Chr4 5 CH_chi_735 3 4 0.000434662
Carica papaya supercontig_51 5 CH_cpa_267 3 3 0.0000609386
Carica papaya supercontig_179 5 CH_cpa_268 3 3 0.0000609386
Chenopodium quinoa C_Quinoa_Scaffold_2299 5 CH_cqu_22 13 21 7.50159e-26
Chenopodium quinoa C_Quinoa_Scaffold_3973 5 CH_cqu_890 3 3 0.000409123
Davidia involucrata GWHABJS00000014 5 CH_din_246 4 4 0.000000118692
Davidia involucrata GWHABJS00000001 5 CH_din_497 3 3 0.0000930639
Davidia involucrata GWHABJS00000015 5 CH_din_858 3 5 0.000928813
Durio zibethinus NW_019167993.1 5 CH_dzi_155 5 7 0.0000000101442
Eucalyptus grandis Chr11 5 CH_egr_719 4 4 0.000000138526
Eucalyptus grandis Chr01 5 CH_egr_799 4 5 0.000000691865
Eucalyptus grandis Chr09 5 CH_egr_980 4 9 0.000017358
Erythranthe guttata scaffold_8 5 CH_egut_452 4 8 0.0000295962
Erythranthe guttata scaffold_10 5 CH_egut_46 9 9 8.49482e-21
Fragaria vesca Fvb3 5 CH_fve_311 4 4 0.0000000621171
Glycine max Gm19 5 CH_gma_307 5 7 0.0000000437072
Glycine max Gm02 5 CH_gma_59 8 9 1.5277e-16
Glycine max Gm13 5 CH_gma_849 3 3 0.000492534
Helianthus annuus HanXRQChr10 5 CH_han_609 4 7 0.00000315354
Lupinus albus Lalb_Chr05 5 CH_lal_247 4 4 0.000000721577
Lonicera japonica GWHAAZE00000002 5 CH_lonja_840 3 3 0.000112037
Magnolia biondii Chr15 5 CH_mbi_971 3 5 0.000274555
Magnolia biondii Chr03 5 CH_mbi_972 3 5 0.000274555
Malus domestica Chr11 5 CH_mdo_639 4 6 0.00000251939
Olea europaea chr1 5 CH_oeu_135 4 4 0.000000105089
Olea europaea chr18 5 CH_oeu_174 4 5 0.000000524916
Petunia axillaris Peaxi162Scf01056 5 CH_pax_104 5 5 0.00000000028194
Petunia axillaris Peaxi162Scf00309 5 CH_pax_497 3 3 0.000120399
Pisum sativum chr2LG1 5 CH_psa_144 7 35 0.00000000273097
Papaver somniferum NC_039362.1 5 CH_pso_1161 4 11 0.000495048
Papaver somniferum NC_039363.1 5 CH_pso_1245 3 3 0.000752429
Papaver somniferum NC_039368.1 5 CH_pso_158 7 8 0.0000000000000960516
Papaver somniferum NC_039366.1 5 CH_pso_291 6 9 0.000000000506946
Populus trichocarpa Chr08 5 CH_ptr_202 5 5 0.000000000498088
Quercus lobata 8 5 CH_qlo_182 8 8 3.75222e-19
Quercus lobata 4 5 CH_qlo_813 4 4 0.000000140818
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_521 4 4 0.0000000437749
Rhododendron simsii chr05 5 CH_rsi_259 5 5 0.000000000248048
Rhododendron simsii chr08 5 CH_rsi_726 3 3 0.000115086
Salvia bowleyana GWHASIU00000006 5 CH_sbo_229 7 31 0.00000000172924
Solanum lycopersicum SL4.0ch02 5 CH_sly_202 5 5 0.00000000100051
Solanum lycopersicum SL4.0ch05 5 CH_sly_774 4 12 0.000256392
Solanum tuberosum ST4.03ch02 5 CH_stu_203 5 5 0.0000000000986432
Solanum tuberosum ST4.03ch02 5 CH_stu_640 3 3 0.0000725761
Theobroma cacao Chromosome_1 5 CH_tca_324 4 4 0.000000229344
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_240 4 4 0.000000381084
Trifolium pratense Tp57577_TGAC_v2_LG6 5 CH_tpr_789 3 4 0.000804255
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_195 4 4 0.000000126056
Zea mays 6 5 CH_zma_407 3 3 0.000163394
Zea mays 9 5 CH_zma_408 3 3 0.000163394
Acer truncatum chr12 6 CH_acertr_295 4 4 0.000000142699
Actinidia chinensis Lachesis_group3 6 CH_ach_502 3 4 0.000490247
Arabidopsis lyrata scaffold_4 6 CH_aly_468 3 3 0.0000992027
Amaranthus hybridus AmaHy_arrow1_Scaffold_16 6 CH_amhyb_279 3 3 0.000195822
Aquilegia oxysepala CHR02 6 CH_aox_366 3 3 0.000119068
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_1124 3 3 0.000377582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_1125 3 3 0.000377582
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_533 5 10 0.000000287299
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_690 5 15 0.00000339891
Amborella trichopoda AmTr_v1.0_scaffold00023 6 CH_atr_443 3 4 0.000170061
Brassica napus A10 6 CH_bna_1188 3 3 0.000231313
Beta vulgaris Chr9_EL10_PGA_scaffold8 6 CH_bvu_21 12 31 1.76084e-20
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_441 3 3 0.000269752
Camellia sinensis var. sinensis Chr2 6 CH_camsi_1141 3 3 0.000212978
Capsicum annuum PGAv.1.6.scaffold497 6 CH_can_315 4 4 0.000000208752
Capsicum annuum PGAv.1.6.scaffold203 6 CH_can_611 3 3 0.000126337
Chara braunii BFEA01000003 6 CH_cbr_112 3 4 0.00000173806
Coffea canephora chr7 6 CH_ccan_121 4 10 0.00000000660386
Coffea canephora chr6 6 CH_ccan_581 3 18 0.000293736
Citrus clementina scaffold_3 6 CH_ccl_580 3 3 0.00011588
Carpinus fangiana Cfa03 6 CH_cfa_371 3 3 0.0000281865
Cardamine hirsuta Chr4 6 CH_chi_735 3 4 0.000434662
Carica papaya supercontig_51 6 CH_cpa_267 3 3 0.0000609386
Carica papaya supercontig_179 6 CH_cpa_268 3 3 0.0000609386
Chenopodium quinoa C_Quinoa_Scaffold_2299 6 CH_cqu_22 13 21 7.50159e-26
Chenopodium quinoa C_Quinoa_Scaffold_3973 6 CH_cqu_890 3 3 0.000409123
Davidia involucrata GWHABJS00000014 6 CH_din_246 4 4 0.000000118692
Davidia involucrata GWHABJS00000001 6 CH_din_497 3 3 0.0000930639
Davidia involucrata GWHABJS00000015 6 CH_din_858 3 5 0.000928813
Durio zibethinus NW_019167993.1 6 CH_dzi_155 5 7 0.0000000101442
Eucalyptus grandis Chr11 6 CH_egr_719 4 4 0.000000138526
Eucalyptus grandis Chr01 6 CH_egr_799 4 5 0.000000691865
Eucalyptus grandis Chr09 6 CH_egr_980 4 9 0.000017358
Erythranthe guttata scaffold_8 6 CH_egut_452 4 8 0.0000295962
Erythranthe guttata scaffold_10 6 CH_egut_46 9 9 8.49482e-21
Fragaria x ananassa Fvb3-4 6 CH_fan_1287 3 4 0.000979342
Fragaria vesca Fvb3 6 CH_fve_311 4 4 0.0000000621171
Glycine max Gm19 6 CH_gma_307 5 7 0.0000000437072
Glycine max Gm02 6 CH_gma_59 8 9 1.5277e-16
Glycine max Gm13 6 CH_gma_849 3 3 0.000492534
Helianthus annuus HanXRQChr10 6 CH_han_609 4 7 0.00000315354
Lupinus albus Lalb_Chr05 6 CH_lal_247 4 4 0.000000721577
Lonicera japonica GWHAAZE00000002 6 CH_lonja_840 3 3 0.000112037
Magnolia biondii Chr15 6 CH_mbi_971 3 5 0.000274555
Magnolia biondii Chr03 6 CH_mbi_972 3 5 0.000274555
Malus domestica Chr11 6 CH_mdo_639 4 6 0.00000251939
Olea europaea chr1 6 CH_oeu_135 4 4 0.000000105089
Olea europaea chr18 6 CH_oeu_174 4 5 0.000000524916
Petunia axillaris Peaxi162Scf01056 6 CH_pax_104 5 5 0.00000000028194
Petunia axillaris Peaxi162Scf00309 6 CH_pax_497 3 3 0.000120399
Pisum sativum chr2LG1 6 CH_psa_144 7 35 0.00000000273097
Papaver somniferum NC_039362.1 6 CH_pso_1161 4 11 0.000495048
Papaver somniferum NC_039363.1 6 CH_pso_1245 3 3 0.000752429
Papaver somniferum NC_039368.1 6 CH_pso_158 7 8 0.0000000000000960516
Papaver somniferum NC_039366.1 6 CH_pso_291 6 9 0.000000000506946
Populus trichocarpa Chr08 6 CH_ptr_202 5 5 0.000000000498088
Quercus lobata 8 6 CH_qlo_182 8 8 3.75222e-19
Quercus lobata 4 6 CH_qlo_813 4 4 0.000000140818
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_521 4 4 0.0000000437749
Rhododendron simsii chr05 6 CH_rsi_259 5 5 0.000000000248048
Rhododendron simsii chr08 6 CH_rsi_726 3 3 0.000115086
Salvia bowleyana GWHASIU00000006 6 CH_sbo_229 7 31 0.00000000172924
Solanum lycopersicum SL4.0ch02 6 CH_sly_202 5 5 0.00000000100051
Solanum lycopersicum SL4.0ch05 6 CH_sly_774 4 12 0.000256392
Solanum tuberosum ST4.03ch02 6 CH_stu_203 5 5 0.0000000000986432
Solanum tuberosum ST4.03ch02 6 CH_stu_640 3 3 0.0000725761
Theobroma cacao Chromosome_1 6 CH_tca_324 4 4 0.000000229344
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_240 4 4 0.000000381084
Trifolium pratense Tp57577_TGAC_v2_LG6 6 CH_tpr_789 3 4 0.000804255
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_195 4 4 0.000000126056
Zea mays 6 6 CH_zma_407 3 3 0.000163394
Zea mays 9 6 CH_zma_408 3 3 0.000163394

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001