Functional clusters
Information
- Type InterPro
- Description Transcription factor TGA like domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_421 | 3 | 5 | 0.0000632707 |
| Aquilegia oxysepala | CHR04 | 5 | CH_aox_297 | 3 | 3 | 0.0000316074 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_40 | 6 | 7 | 0.000000000000196785 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_565 | 3 | 14 | 0.000433369 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_618 | 3 | 16 | 0.000666473 |
| Brassica carinata | Contig593 | 5 | CH_bca_1343 | 3 | 4 | 0.0000718988 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 5 | CH_can_368 | 4 | 8 | 0.00000125467 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_551 | 3 | 5 | 0.0000952216 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 5 | CH_cqu_243 | 4 | 4 | 0.00000000477131 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 5 | CH_cqu_537 | 3 | 3 | 0.00000875597 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_406 | 3 | 4 | 0.0000365487 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_333 | 3 | 3 | 0.00000811507 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_468 | 3 | 3 | 0.0000475922 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_469 | 3 | 3 | 0.0000475922 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_148 | 4 | 5 | 0.0000000256636 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_578 | 3 | 7 | 0.000101904 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_139 | 6 | 7 | 0.0000000000000442621 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_584 | 3 | 4 | 0.0000364445 |
| Petunia axillaris | Peaxi162Scf00170 | 5 | CH_pax_227 | 4 | 7 | 0.000000323279 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_2465 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_178 | 5 | 7 | 0.000000000150756 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_67 | 6 | 7 | 0.00000000000000485518 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_340 | 4 | 6 | 0.0000000904553 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_421 | 3 | 5 | 0.0000632707 |
| Aquilegia oxysepala | CHR04 | 6 | CH_aox_297 | 3 | 3 | 0.0000316074 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_40 | 6 | 7 | 0.000000000000196785 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_565 | 3 | 14 | 0.000433369 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_618 | 3 | 16 | 0.000666473 |
| Brassica carinata | Contig593 | 6 | CH_bca_1343 | 3 | 4 | 0.0000718988 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 6 | CH_can_368 | 4 | 8 | 0.00000125467 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_551 | 3 | 5 | 0.0000952216 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 6 | CH_cqu_243 | 4 | 4 | 0.00000000477131 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 6 | CH_cqu_537 | 3 | 3 | 0.00000875597 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_406 | 3 | 4 | 0.0000365487 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_333 | 3 | 3 | 0.00000811507 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_468 | 3 | 3 | 0.0000475922 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_469 | 3 | 3 | 0.0000475922 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_148 | 4 | 5 | 0.0000000256636 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_578 | 3 | 7 | 0.000101904 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_139 | 6 | 7 | 0.0000000000000442621 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_584 | 3 | 4 | 0.0000364445 |
| Petunia axillaris | Peaxi162Scf00170 | 6 | CH_pax_227 | 4 | 7 | 0.000000323279 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_2465 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_178 | 5 | 7 | 0.000000000150756 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_67 | 6 | 7 | 0.00000000000000485518 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_340 | 4 | 6 | 0.0000000904553 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |