Functional clusters
Information
- Type InterPro
- Description Domain of unknown function DUF4220
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 5 | CH_acertr_1033 | 3 | 9 | 0.000961273 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_82 | 5 | 31 | 0.00000000000518619 |
| Brassica carinata | ChrC06 | 5 | CH_bca_156 | 5 | 8 | 0.00000000000230847 |
| Brassica napus | A06 | 5 | CH_bna_1432 | 2 | 2 | 0.00066822 |
| Brassica napus | C08 | 5 | CH_bna_1433 | 2 | 2 | 0.00066822 |
| Brassica napus | C07 | 5 | CH_bna_1434 | 2 | 2 | 0.00066822 |
| Brassica oleracea | C7 | 5 | CH_bol_896 | 2 | 2 | 0.000915212 |
| Brassica oleracea | C8 | 5 | CH_bol_897 | 2 | 2 | 0.000915212 |
| Brassica rapa | A06 | 5 | CH_bra_403 | 2 | 2 | 0.000128794 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_291 | 6 | 32 | 0.000000000305766 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_344 | 6 | 46 | 0.00000000314593 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 5 | CH_can_464 | 3 | 9 | 0.0000171846 |
| Corylus avellana | 2 | 5 | CH_cav_127 | 7 | 60 | 0.000000000117849 |
| Corylus avellana | 3 | 5 | CH_cav_590 | 3 | 7 | 0.00020949 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_356 | 3 | 3 | 0.0000152376 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_79 | 6 | 7 | 0.0000000000000396054 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_16 | 9 | 16 | 1.32512e-25 |
| Durio zibethinus | NW_019167827.1 | 5 | CH_dzi_359 | 3 | 4 | 0.0000334988 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_2 | 28 | 29 | 1.73006e-64 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_322 | 13 | 76 | 0.0000000000000351196 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_355 | 8 | 12 | 0.000000000000399159 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_98 | 16 | 39 | 3.96687e-25 |
| Hydrangea macrophylla | Hma1.2p1_0944F.1 | 5 | CH_hma_216 | 3 | 8 | 0.0000103591 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_189 | 6 | 9 | 0.00000000000010852 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_864 | 3 | 6 | 0.000165474 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_46 | 10 | 61 | 1.85301e-20 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_975 | 3 | 10 | 0.000288144 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_275 | 3 | 9 | 0.00000292246 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_19 | 16 | 60 | 1.06622e-25 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_248 | 7 | 40 | 0.0000000796827 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_285 | 5 | 10 | 0.000000307915 |
| Prunus persica | Pp03 | 5 | CH_ppe_332 | 4 | 10 | 0.0000000861812 |
| Phaseolus vulgaris | Chr06 | 5 | CH_pvu_332 | 3 | 9 | 0.00000271976 |
| Quercus lobata | 5 | 5 | CH_qlo_39 | 20 | 66 | 9.16439e-35 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_31 | 14 | 28 | 3.40664e-29 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_207 | 4 | 4 | 0.0000000153708 |
| Salix brachista | GWHAAZH00000017 | 5 | CH_sbr_615 | 3 | 6 | 0.00038953 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_187 | 3 | 4 | 0.0000000343805 |
| Tripterygium wilfordii | NC_052244.1 | 5 | CH_twi_135 | 4 | 6 | 0.00000000780217 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_175 | 5 | 77 | 0.000000550237 |
| Vitis vinifera | chr5 | 5 | CH_vvi_58 | 9 | 26 | 2.40114e-19 |
| Vitis vinifera | chr19 | 5 | CH_vvi_655 | 3 | 8 | 0.000395659 |
| Zea mays | 4 | 5 | CH_zma_160 | 5 | 12 | 0.0000000493078 |
| Zea mays | 10 | 5 | CH_zma_415 | 3 | 4 | 0.000222411 |
| Acer truncatum | chr2 | 6 | CH_acertr_1033 | 3 | 9 | 0.000961273 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_82 | 5 | 31 | 0.00000000000518619 |
| Brassica carinata | ChrC06 | 6 | CH_bca_156 | 5 | 8 | 0.00000000000230847 |
| Brassica napus | A06 | 6 | CH_bna_1432 | 2 | 2 | 0.00066822 |
| Brassica napus | C08 | 6 | CH_bna_1433 | 2 | 2 | 0.00066822 |
| Brassica napus | C07 | 6 | CH_bna_1434 | 2 | 2 | 0.00066822 |
| Brassica oleracea | C7 | 6 | CH_bol_896 | 2 | 2 | 0.000915212 |
| Brassica oleracea | C8 | 6 | CH_bol_897 | 2 | 2 | 0.000915212 |
| Brassica rapa | A06 | 6 | CH_bra_403 | 2 | 2 | 0.000128794 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_291 | 6 | 32 | 0.000000000305766 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_344 | 6 | 46 | 0.00000000314593 |
| Capsicum annuum | PGAv.1.6.scaffold641 | 6 | CH_can_464 | 3 | 9 | 0.0000171846 |
| Corylus avellana | 2 | 6 | CH_cav_127 | 7 | 60 | 0.000000000117849 |
| Corylus avellana | 3 | 6 | CH_cav_590 | 3 | 7 | 0.00020949 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_356 | 3 | 3 | 0.0000152376 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_79 | 6 | 7 | 0.0000000000000396054 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_16 | 9 | 16 | 1.32512e-25 |
| Durio zibethinus | NW_019167827.1 | 6 | CH_dzi_359 | 3 | 4 | 0.0000334988 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_2 | 28 | 29 | 1.73006e-64 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_322 | 13 | 76 | 0.0000000000000351196 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_355 | 8 | 12 | 0.000000000000399159 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_98 | 16 | 39 | 3.96687e-25 |
| Fragaria x ananassa | Fvb5-3 | 6 | CH_fan_150 | 5 | 20 | 0.0000000000408835 |
| Hydrangea macrophylla | Hma1.2p1_0944F.1 | 6 | CH_hma_216 | 3 | 8 | 0.0000103591 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_189 | 6 | 9 | 0.00000000000010852 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_864 | 3 | 6 | 0.000165474 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_46 | 10 | 61 | 1.85301e-20 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_975 | 3 | 10 | 0.000288144 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_275 | 3 | 9 | 0.00000292246 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_19 | 16 | 60 | 1.06622e-25 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_248 | 7 | 40 | 0.0000000796827 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_285 | 5 | 10 | 0.000000307915 |
| Prunus persica | Pp03 | 6 | CH_ppe_332 | 4 | 10 | 0.0000000861812 |
| Phaseolus vulgaris | Chr06 | 6 | CH_pvu_332 | 3 | 9 | 0.00000271976 |
| Quercus lobata | 5 | 6 | CH_qlo_39 | 20 | 66 | 9.16439e-35 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_31 | 14 | 28 | 3.40664e-29 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_207 | 4 | 4 | 0.0000000153708 |
| Salix brachista | GWHAAZH00000017 | 6 | CH_sbr_615 | 3 | 6 | 0.00038953 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_187 | 3 | 4 | 0.0000000343805 |
| Tripterygium wilfordii | NC_052244.1 | 6 | CH_twi_135 | 4 | 6 | 0.00000000780217 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_175 | 5 | 77 | 0.000000550237 |
| Vitis vinifera | chr5 | 6 | CH_vvi_58 | 9 | 26 | 2.40114e-19 |
| Vitis vinifera | chr19 | 6 | CH_vvi_655 | 3 | 8 | 0.000395659 |
| Zea mays | 4 | 6 | CH_zma_160 | 5 | 12 | 0.0000000493078 |
| Zea mays | 10 | 6 | CH_zma_415 | 3 | 4 | 0.000222411 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |