Functional clusters
Information
- Type InterPro
- Description Meiosis regulator and mRNA stability factor 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 5 | CH_aar_168 | 3 | 3 | 0.000000436997 |
| Acer truncatum | chr5 | 5 | CH_acertr_959 | 2 | 3 | 0.000634436 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 5 | CH_atr_586 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC08 | 5 | CH_bca_1756 | 4 | 12 | 0.000427112 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1842 | 3 | 3 | 0.000503884 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1843 | 3 | 3 | 0.000503884 |
| Brassica carinata | ChrC03 | 5 | CH_bca_49 | 13 | 75 | 1.05988e-17 |
| Brassica carinata | ChrB05 | 5 | CH_bca_581 | 6 | 22 | 0.000000187137 |
| Brassica napus | A01 | 5 | CH_bna_301 | 6 | 11 | 0.00000000198962 |
| Brassica napus | C06 | 5 | CH_bna_599 | 5 | 11 | 0.0000010867 |
| Brassica napus | A09 | 5 | CH_bna_609 | 4 | 4 | 0.00000129182 |
| Brassica napus | C03 | 5 | CH_bna_866 | 5 | 18 | 0.0000199382 |
| Brassica napus | C02 | 5 | CH_bna_9 | 19 | 61 | 1.91665e-32 |
| Brassica oleracea | C7 | 5 | CH_bol_327 | 4 | 4 | 0.000000890058 |
| Brassica oleracea | C2 | 5 | CH_bol_51 | 11 | 61 | 0.0000000000000145969 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_340 | 4 | 8 | 0.00000000255019 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_558 | 2 | 2 | 0.000454408 |
| Carica papaya | supercontig_72 | 5 | CH_cpa_351 | 2 | 2 | 0.0000950661 |
| Eutrema salsugineum | scaffold_10 | 5 | CH_esa_366 | 5 | 54 | 0.00012993 |
| Glycine max | Gm04 | 5 | CH_gma_365 | 4 | 17 | 0.000000389963 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_1187 | 2 | 2 | 0.0008115 |
| Medicago truncatula | chr8 | 5 | CH_mtr_998 | 4 | 42 | 0.0000705944 |
| Olea europaea | chr3 | 5 | CH_oeu_38 | 6 | 14 | 0.000000000000361671 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_69 | 6 | 16 | 0.000000000000035967 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_182 | 4 | 4 | 0.0000000000729988 |
| Salix brachista | GWHAAZH00000013 | 5 | CH_sbr_147 | 4 | 4 | 0.000000000157649 |
| Sapria himalayana | scaffold12_13443846 | 5 | CH_shi_548 | 2 | 2 | 0.000571804 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_104 | 5 | 5 | 0.0000000000000112172 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_806 | 2 | 2 | 0.000929238 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_168 | 3 | 3 | 0.000000436997 |
| Acer truncatum | chr5 | 6 | CH_acertr_959 | 2 | 3 | 0.000634436 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 6 | CH_atr_586 | 2 | 2 | 0.000476644 |
| Brassica carinata | ChrC08 | 6 | CH_bca_1756 | 4 | 12 | 0.000427112 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1842 | 3 | 3 | 0.000503884 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1843 | 3 | 3 | 0.000503884 |
| Brassica carinata | ChrC03 | 6 | CH_bca_49 | 13 | 75 | 1.05988e-17 |
| Brassica carinata | ChrB05 | 6 | CH_bca_581 | 6 | 22 | 0.000000187137 |
| Brassica napus | A01 | 6 | CH_bna_301 | 6 | 11 | 0.00000000198962 |
| Brassica napus | C06 | 6 | CH_bna_599 | 5 | 11 | 0.0000010867 |
| Brassica napus | A09 | 6 | CH_bna_609 | 4 | 4 | 0.00000129182 |
| Brassica napus | C03 | 6 | CH_bna_866 | 5 | 18 | 0.0000199382 |
| Brassica napus | C02 | 6 | CH_bna_9 | 19 | 61 | 1.91665e-32 |
| Brassica oleracea | C7 | 6 | CH_bol_327 | 4 | 4 | 0.000000890058 |
| Brassica oleracea | C2 | 6 | CH_bol_51 | 11 | 61 | 0.0000000000000145969 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_340 | 4 | 8 | 0.00000000255019 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_558 | 2 | 2 | 0.000454408 |
| Carica papaya | supercontig_72 | 6 | CH_cpa_351 | 2 | 2 | 0.0000950661 |
| Eutrema salsugineum | scaffold_10 | 6 | CH_esa_366 | 5 | 54 | 0.00012993 |
| Glycine max | Gm04 | 6 | CH_gma_365 | 4 | 17 | 0.000000389963 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_1187 | 2 | 2 | 0.0008115 |
| Medicago truncatula | chr8 | 6 | CH_mtr_998 | 4 | 42 | 0.0000705944 |
| Olea europaea | chr3 | 6 | CH_oeu_38 | 6 | 14 | 0.000000000000361671 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_69 | 6 | 16 | 0.000000000000035967 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_182 | 4 | 4 | 0.0000000000729988 |
| Salix brachista | GWHAAZH00000013 | 6 | CH_sbr_147 | 4 | 4 | 0.000000000157649 |
| Sapria himalayana | scaffold12_13443846 | 6 | CH_shi_548 | 2 | 2 | 0.000571804 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_104 | 5 | 5 | 0.0000000000000112172 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_806 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |