Functional clusters
Information
- Type InterPro
- Description Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-3 | 5 | CH_aar_157 | 3 | 4 | 0.000000199754 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_1108 | 2 | 2 | 0.000299383 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_610 | 2 | 2 | 0.000382665 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_819 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_766 | 2 | 2 | 0.000448722 |
| Hydrangea macrophylla | Hma1.2p1_0218F.1 | 5 | CH_hma_653 | 2 | 2 | 0.000666519 |
| Medicago truncatula | chr5 | 5 | CH_mtr_208 | 6 | 28 | 0.000000000000084396 |
| Nicotiana tabacum | Nitab4.5_0000687 | 5 | CH_nta_91 | 3 | 3 | 0.000000180611 |
| Pisum sativum | chr2LG1 | 5 | CH_psa_265 | 3 | 3 | 0.000000489798 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_843 | 3 | 6 | 0.0000445114 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_141 | 5 | 5 | 0.00000000000000728449 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_956 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_857 | 2 | 2 | 0.000667186 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_118 | 4 | 6 | 0.000000000683062 |
| Vigna mungo | CM024073.1 | 5 | CH_vmu_536 | 2 | 2 | 0.000387685 |
| Aethionema arabicum | LG-3 | 6 | CH_aar_157 | 3 | 4 | 0.000000199754 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_1108 | 2 | 2 | 0.000299383 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_610 | 2 | 2 | 0.000382665 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_819 | 2 | 2 | 0.000750188 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_766 | 2 | 2 | 0.000448722 |
| Hydrangea macrophylla | Hma1.2p1_0218F.1 | 6 | CH_hma_653 | 2 | 2 | 0.000666519 |
| Medicago truncatula | chr5 | 6 | CH_mtr_208 | 6 | 28 | 0.000000000000084396 |
| Nicotiana tabacum | Nitab4.5_0000687 | 6 | CH_nta_91 | 3 | 3 | 0.000000180611 |
| Pisum sativum | chr2LG1 | 6 | CH_psa_265 | 3 | 3 | 0.000000489798 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_843 | 3 | 6 | 0.0000445114 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_141 | 5 | 5 | 0.00000000000000728449 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_956 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_857 | 2 | 2 | 0.000667186 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_118 | 4 | 6 | 0.000000000683062 |
| Vigna mungo | CM024073.1 | 6 | CH_vmu_536 | 2 | 2 | 0.000387685 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |