Functional clusters
Information
- Type InterPro
- Description Domain of unknown function DUF3444
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_12 | 10 | 10 | 1.93027e-28 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_389 | 3 | 17 | 0.000229111 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_603 | 3 | 3 | 0.000000752906 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_153 | 4 | 6 | 0.0000000025177 |
| Brassica carinata | ChrC04 | 5 | CH_bca_1038 | 3 | 3 | 0.0000090779 |
| Brassica carinata | ChrC04 | 5 | CH_bca_1496 | 3 | 6 | 0.000181373 |
| Brassica carinata | ChrC05 | 5 | CH_bca_157 | 8 | 77 | 0.00000000000237175 |
| Brassica carinata | ChrB08 | 5 | CH_bca_434 | 4 | 5 | 0.0000000198838 |
| Brassica napus | A03 | 5 | CH_bna_196 | 5 | 7 | 0.0000000000590835 |
| Brassica napus | C03 | 5 | CH_bna_260 | 5 | 10 | 0.000000000708177 |
| Brassica napus | C09 | 5 | CH_bna_339 | 4 | 4 | 0.00000000606758 |
| Brassica napus | A10 | 5 | CH_bna_824 | 3 | 3 | 0.0000128189 |
| Brassica oleracea | C3 | 5 | CH_bol_247 | 4 | 8 | 0.0000000926652 |
| Brassica oleracea | C9 | 5 | CH_bol_393 | 3 | 3 | 0.00000368599 |
| Brassica rapa | A05 | 5 | CH_bra_269 | 4 | 17 | 0.00000711185 |
| Brassica rapa | A03 | 5 | CH_bra_66 | 5 | 7 | 0.0000000000284083 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_110 | 4 | 4 | 0.000000000107034 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 5 | CH_can_420 | 3 | 4 | 0.00000491257 |
| Chara braunii | BFEA01000092 | 5 | CH_cbr_328 | 2 | 3 | 0.000647303 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_119 | 5 | 6 | 0.00000000000879894 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_386 | 3 | 3 | 0.0000184439 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_46 | 7 | 7 | 5.78652e-18 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_25 | 7 | 7 | 4.88954e-19 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_91 | 6 | 12 | 0.0000000000000442472 |
| Lotus japonicus | chr5 | 5 | CH_lja_107 | 4 | 4 | 0.00000000199663 |
| Nicotiana tabacum | Nitab4.5_0000245 | 5 | CH_nta_153 | 3 | 5 | 0.0000151622 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_123 | 6 | 29 | 0.0000000000131311 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_227 | 6 | 14 | 0.0000000000158103 |
| Papaver somniferum | NW_020619603.1 | 5 | CH_pso_457 | 4 | 5 | 0.000000072741 |
| Quercus lobata | 10 | 5 | CH_qlo_559 | 4 | 5 | 0.000000000681151 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_239 | 5 | 6 | 0.000000000000341285 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_181 | 5 | 10 | 0.000000000191885 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_270 | 4 | 8 | 0.0000000715477 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_394 | 3 | 3 | 0.00000287565 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_126 | 6 | 7 | 0.0000000000000504221 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_152 | 6 | 10 | 0.00000000000150996 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_172 | 6 | 12 | 0.00000000000663589 |
| Selenicereus undatus | Scaffold_33673 | 5 | CH_sun_392 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group0 | 5 | CH_tar_409 | 3 | 4 | 0.00000787005 |
| Tarenaya hassleriana | NW_010965451.1 | 5 | CH_tha_148 | 3 | 3 | 0.00000266381 |
| Vanilla planifolia | CM028156.1 | 5 | CH_vpl_480 | 4 | 72 | 0.000154927 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_12 | 10 | 10 | 1.93027e-28 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_389 | 3 | 17 | 0.000229111 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_603 | 3 | 3 | 0.000000752906 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_153 | 4 | 6 | 0.0000000025177 |
| Brassica carinata | ChrC04 | 6 | CH_bca_1038 | 3 | 3 | 0.0000090779 |
| Brassica carinata | ChrC04 | 6 | CH_bca_1496 | 3 | 6 | 0.000181373 |
| Brassica carinata | ChrC05 | 6 | CH_bca_157 | 8 | 77 | 0.00000000000237175 |
| Brassica carinata | ChrB08 | 6 | CH_bca_434 | 4 | 5 | 0.0000000198838 |
| Brassica napus | A03 | 6 | CH_bna_196 | 5 | 7 | 0.0000000000590835 |
| Brassica napus | C03 | 6 | CH_bna_260 | 5 | 10 | 0.000000000708177 |
| Brassica napus | C09 | 6 | CH_bna_339 | 4 | 4 | 0.00000000606758 |
| Brassica napus | A10 | 6 | CH_bna_824 | 3 | 3 | 0.0000128189 |
| Brassica oleracea | C3 | 6 | CH_bol_247 | 4 | 8 | 0.0000000926652 |
| Brassica oleracea | C9 | 6 | CH_bol_393 | 3 | 3 | 0.00000368599 |
| Brassica rapa | A05 | 6 | CH_bra_269 | 4 | 17 | 0.00000711185 |
| Brassica rapa | A03 | 6 | CH_bra_66 | 5 | 7 | 0.0000000000284083 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_110 | 4 | 4 | 0.000000000107034 |
| Capsicum annuum | PGAv.1.6.scaffold134 | 6 | CH_can_420 | 3 | 4 | 0.00000491257 |
| Chara braunii | BFEA01000092 | 6 | CH_cbr_328 | 2 | 3 | 0.000647303 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_119 | 5 | 6 | 0.00000000000879894 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_386 | 3 | 3 | 0.0000184439 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_46 | 7 | 7 | 5.78652e-18 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_25 | 7 | 7 | 4.88954e-19 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_100 | 6 | 12 | 0.000000000000421617 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_608 | 3 | 3 | 0.00000779615 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_947 | 3 | 7 | 0.00027253 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_91 | 6 | 12 | 0.0000000000000442472 |
| Lotus japonicus | chr5 | 6 | CH_lja_107 | 4 | 4 | 0.00000000199663 |
| Nicotiana tabacum | Nitab4.5_0000245 | 6 | CH_nta_153 | 3 | 5 | 0.0000151622 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_123 | 6 | 29 | 0.0000000000131311 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_227 | 6 | 14 | 0.0000000000158103 |
| Papaver somniferum | NW_020619603.1 | 6 | CH_pso_457 | 4 | 5 | 0.000000072741 |
| Quercus lobata | 10 | 6 | CH_qlo_559 | 4 | 5 | 0.000000000681151 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_239 | 5 | 6 | 0.000000000000341285 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_181 | 5 | 10 | 0.000000000191885 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_270 | 4 | 8 | 0.0000000715477 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_394 | 3 | 3 | 0.00000287565 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_126 | 6 | 7 | 0.0000000000000504221 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_152 | 6 | 10 | 0.00000000000150996 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_172 | 6 | 12 | 0.00000000000663589 |
| Selenicereus undatus | Scaffold_33673 | 6 | CH_sun_392 | 2 | 2 | 0.000726639 |
| Trochodendron aralioides | group0 | 6 | CH_tar_409 | 3 | 4 | 0.00000787005 |
| Tarenaya hassleriana | NW_010965451.1 | 6 | CH_tha_148 | 3 | 3 | 0.00000266381 |
| Vanilla planifolia | CM028156.1 | 6 | CH_vpl_480 | 4 | 72 | 0.000154927 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |