Functional clusters
Information
- Type InterPro
- Description Amidase signature domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_863 | 3 | 4 | 0.0000351852 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_286 | 5 | 9 | 0.000000000221648 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_355 | 4 | 4 | 0.00000000365927 |
| Capsicum annuum | PGAv.1.6.scaffold439 | 5 | CH_can_139 | 5 | 5 | 0.00000000000216202 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_126 | 5 | 5 | 0.000000000000269034 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_70 | 7 | 7 | 3.46334e-19 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_281 | 3 | 4 | 0.0000119537 |
| Davidia involucrata | GWHABJS00000006 | 5 | CH_din_478 | 3 | 6 | 0.0000509828 |
| Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_249 | 4 | 15 | 0.000000967645 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_74 | 10 | 10 | 3.69704e-29 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_391 | 4 | 13 | 0.00000104064 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_333 | 3 | 3 | 0.000003518 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_509 | 3 | 4 | 0.00000721107 |
| Malus domestica | Chr12 | 5 | CH_mdo_404 | 4 | 6 | 0.0000000310227 |
| Malus domestica | Chr10 | 5 | CH_mdo_682 | 3 | 3 | 0.00000496124 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_534 | 3 | 8 | 0.000113851 |
| Medicago truncatula | chr4 | 5 | CH_mtr_883 | 3 | 6 | 0.0000283416 |
| Olea europaea | chr19 | 5 | CH_oeu_506 | 3 | 12 | 0.000268376 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_346 | 3 | 4 | 0.00000965896 |
| Prunus persica | Pp08 | 5 | CH_ppe_235 | 4 | 4 | 0.00000000061649 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1221 | 3 | 16 | 0.000655138 |
| Populus trichocarpa | Chr04 | 5 | CH_ptr_283 | 4 | 6 | 0.0000000206694 |
| Populus trichocarpa | Chr09 | 5 | CH_ptr_477 | 3 | 4 | 0.0000136266 |
| Quercus lobata | 3 | 5 | CH_qlo_358 | 8 | 43 | 0.00000000000026641 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_542 | 4 | 9 | 0.0000000569357 |
| Salix brachista | GWHAAZH00000004 | 5 | CH_sbr_402 | 3 | 5 | 0.000017026 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1566 | 3 | 4 | 0.0000466256 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_75 | 12 | 19 | 1.31291e-30 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_328 | 3 | 3 | 0.00000391093 |
| Tripterygium wilfordii | NC_052253.1 | 5 | CH_twi_134 | 4 | 6 | 0.00000000780217 |
| Vitis vinifera | chr3 | 5 | CH_vvi_62 | 7 | 7 | 2.96765e-19 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_863 | 3 | 4 | 0.0000351852 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_286 | 5 | 9 | 0.000000000221648 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_355 | 4 | 4 | 0.00000000365927 |
| Capsicum annuum | PGAv.1.6.scaffold439 | 6 | CH_can_139 | 5 | 5 | 0.00000000000216202 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_126 | 5 | 5 | 0.000000000000269034 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_70 | 7 | 7 | 3.46334e-19 |
| Cucumis melo | chr11 | 6 | CH_cme_257 | 3 | 5 | 0.0000190819 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_281 | 3 | 4 | 0.0000119537 |
| Davidia involucrata | GWHABJS00000006 | 6 | CH_din_478 | 3 | 6 | 0.0000509828 |
| Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_249 | 4 | 15 | 0.000000967645 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_74 | 10 | 10 | 3.69704e-29 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_391 | 4 | 13 | 0.00000104064 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_333 | 3 | 3 | 0.000003518 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_509 | 3 | 4 | 0.00000721107 |
| Malus domestica | Chr12 | 6 | CH_mdo_404 | 4 | 6 | 0.0000000310227 |
| Malus domestica | Chr10 | 6 | CH_mdo_682 | 3 | 3 | 0.00000496124 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_534 | 3 | 8 | 0.000113851 |
| Medicago truncatula | chr4 | 6 | CH_mtr_883 | 3 | 6 | 0.0000283416 |
| Olea europaea | chr19 | 6 | CH_oeu_506 | 3 | 12 | 0.000268376 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_346 | 3 | 4 | 0.00000965896 |
| Prunus persica | Pp08 | 6 | CH_ppe_235 | 4 | 4 | 0.00000000061649 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1221 | 3 | 16 | 0.000655138 |
| Populus trichocarpa | Chr04 | 6 | CH_ptr_283 | 4 | 6 | 0.0000000206694 |
| Populus trichocarpa | Chr09 | 6 | CH_ptr_477 | 3 | 4 | 0.0000136266 |
| Quercus lobata | 3 | 6 | CH_qlo_358 | 8 | 43 | 0.00000000000026641 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_542 | 4 | 9 | 0.0000000569357 |
| Salix brachista | GWHAAZH00000004 | 6 | CH_sbr_402 | 3 | 5 | 0.000017026 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1566 | 3 | 4 | 0.0000466256 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_75 | 12 | 19 | 1.31291e-30 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_328 | 3 | 3 | 0.00000391093 |
| Tripterygium wilfordii | NC_052253.1 | 6 | CH_twi_134 | 4 | 6 | 0.00000000780217 |
| Vitis vinifera | chr3 | 6 | CH_vvi_62 | 7 | 7 | 2.96765e-19 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |