Functional clusters
Information
- Type InterPro
- Description START-like domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group18 | 5 | CH_ach_426 | 4 | 8 | 0.000312494 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1168 | 4 | 5 | 0.0000259598 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_534 | 6 | 6 | 0.00000000127374 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_406 | 4 | 5 | 0.0000374128 |
| Lonicera japonica | GWHAAZE00000006 | 5 | CH_lonja_338 | 5 | 5 | 0.00000000316501 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_401 | 4 | 4 | 0.00000409122 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_55 | 7 | 9 | 0.0000000000000849298 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_181 | 5 | 6 | 0.00000000121662 |
| Oryza sativa ssp. japonica | chr06 | 5 | CH_osa_526 | 4 | 12 | 0.0000739524 |
| Petunia axillaris | Peaxi162Scf00073 | 5 | CH_pax_127 | 5 | 5 | 0.00000000533656 |
| Petunia axillaris | Peaxi162Scf00347 | 5 | CH_pax_684 | 3 | 3 | 0.000682229 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_590 | 8 | 48 | 0.00000133963 |
| Populus trichocarpa | Chr04 | 5 | CH_ptr_814 | 4 | 11 | 0.000934004 |
| Quercus lobata | 9 | 5 | CH_qlo_198 | 9 | 10 | 1.9631e-18 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2348 | 3 | 3 | 0.000303725 |
| Selaginella moellendorffii | scaffold_101 | 5 | CH_smo_206 | 4 | 9 | 0.0000892715 |
| Selaginella moellendorffii | scaffold_104 | 5 | CH_smo_56 | 6 | 11 | 0.00000000167808 |
| Solanum tuberosum | ST4.03ch00 | 5 | CH_stu_373 | 9 | 78 | 0.000000383191 |
| Trochodendron aralioides | group15 | 5 | CH_tar_109 | 6 | 6 | 0.0000000000443531 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_241 | 5 | 5 | 0.00000000707964 |
| Actinidia chinensis | Lachesis_group18 | 6 | CH_ach_426 | 4 | 8 | 0.000312494 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1168 | 4 | 5 | 0.0000259598 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_534 | 6 | 6 | 0.00000000127374 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_406 | 4 | 5 | 0.0000374128 |
| Lonicera japonica | GWHAAZE00000006 | 6 | CH_lonja_338 | 5 | 5 | 0.00000000316501 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_401 | 4 | 4 | 0.00000409122 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_55 | 7 | 9 | 0.0000000000000849298 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_181 | 5 | 6 | 0.00000000121662 |
| Oryza sativa ssp. japonica | chr06 | 6 | CH_osa_526 | 4 | 12 | 0.0000739524 |
| Petunia axillaris | Peaxi162Scf00073 | 6 | CH_pax_127 | 5 | 5 | 0.00000000533656 |
| Petunia axillaris | Peaxi162Scf00347 | 6 | CH_pax_684 | 3 | 3 | 0.000682229 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_590 | 8 | 48 | 0.00000133963 |
| Populus trichocarpa | Chr04 | 6 | CH_ptr_814 | 4 | 11 | 0.000934004 |
| Quercus lobata | 9 | 6 | CH_qlo_198 | 9 | 10 | 1.9631e-18 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2348 | 3 | 3 | 0.000303725 |
| Selaginella moellendorffii | scaffold_101 | 6 | CH_smo_206 | 4 | 9 | 0.0000892715 |
| Selaginella moellendorffii | scaffold_104 | 6 | CH_smo_56 | 6 | 11 | 0.00000000167808 |
| Solanum tuberosum | ST4.03ch00 | 6 | CH_stu_373 | 9 | 78 | 0.000000383191 |
| Trochodendron aralioides | group15 | 6 | CH_tar_109 | 6 | 6 | 0.0000000000443531 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_241 | 5 | 5 | 0.00000000707964 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |