Functional clusters
Information
- Type InterPro
- Description P-type ATPase, transmembrane domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr6 | 5 | CH_acertr_690 | 3 | 3 | 0.000164756 |
| Actinidia chinensis | Lachesis_group5 | 5 | CH_ach_570 | 3 | 3 | 0.000632432 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_922 | 4 | 8 | 0.0000809779 |
| Brassica carinata | Contig281 | 5 | CH_bca_117 | 7 | 10 | 0.000000000000251838 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_201 | 7 | 11 | 0.00000000000308188 |
| Coffea canephora | chr3 | 5 | CH_ccan_240 | 4 | 29 | 0.00000216923 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_451 | 4 | 7 | 0.0000196683 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_111 | 4 | 4 | 0.000000672743 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_19 | 6 | 6 | 0.0000000000031167 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_372 | 3 | 3 | 0.000304188 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_131 | 6 | 8 | 0.0000000000868728 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_520 | 3 | 3 | 0.000309655 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_104 | 7 | 9 | 0.000000000000875589 |
| Davidia involucrata | GWHABJS00000005 | 5 | CH_din_180 | 5 | 5 | 0.00000000410822 |
| Hydrangea macrophylla | Hma1.2p1_0897F.1 | 5 | CH_hma_198 | 4 | 7 | 0.00000293769 |
| Hydrangea macrophylla | Hma1.2p1_0478F.1 | 5 | CH_hma_54 | 5 | 5 | 0.000000000112283 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_377 | 8 | 52 | 0.0000000157103 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_237 | 5 | 21 | 0.000000708612 |
| Olea europaea | chr2 | 5 | CH_oeu_200 | 5 | 13 | 0.0000016329 |
| Olea europaea | chr9 | 5 | CH_oeu_569 | 3 | 3 | 0.000325154 |
| Olea europaea | scaffold797 | 5 | CH_oeu_570 | 3 | 3 | 0.000325154 |
| Olea europaea | chr20 | 5 | CH_oeu_60 | 8 | 33 | 0.000000000121452 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_525 | 3 | 3 | 0.0000723632 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_593 | 3 | 3 | 0.000275613 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_405 | 6 | 14 | 0.00000000124867 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_127 | 9 | 17 | 6.64806e-16 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_257 | 7 | 18 | 0.00000000021276 |
| Simmondsia chinensis | GWHAASQ00000005 | 5 | CH_sci_346 | 3 | 3 | 0.000213137 |
| Sapria himalayana | scaffold76_2129029 | 5 | CH_shi_558 | 3 | 9 | 0.000632794 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_661 | 3 | 3 | 0.000135573 |
| Trochodendron aralioides | group10 | 5 | CH_tar_929 | 3 | 3 | 0.000724743 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_386 | 4 | 7 | 0.0000122762 |
| Tripterygium wilfordii | NC_052240.1 | 5 | CH_twi_314 | 5 | 26 | 0.0000232301 |
| Utricularia gibba | unitig_749 | 5 | CH_ugi_104 | 3 | 3 | 0.0000409987 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_194 | 5 | 8 | 0.000000118928 |
| Zea mays | 1 | 5 | CH_zma_421 | 3 | 3 | 0.000286873 |
| Acer truncatum | chr6 | 6 | CH_acertr_690 | 3 | 3 | 0.000164756 |
| Actinidia chinensis | Lachesis_group5 | 6 | CH_ach_570 | 3 | 3 | 0.000632432 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_922 | 4 | 8 | 0.0000809779 |
| Brassica carinata | Contig281 | 6 | CH_bca_117 | 7 | 10 | 0.000000000000251838 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_201 | 7 | 11 | 0.00000000000308188 |
| Coffea canephora | chr3 | 6 | CH_ccan_240 | 4 | 29 | 0.00000216923 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_451 | 4 | 7 | 0.0000196683 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_111 | 4 | 4 | 0.000000672743 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_19 | 6 | 6 | 0.0000000000031167 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_372 | 3 | 3 | 0.000304188 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_131 | 6 | 8 | 0.0000000000868728 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_520 | 3 | 3 | 0.000309655 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_104 | 7 | 9 | 0.000000000000875589 |
| Davidia involucrata | GWHABJS00000005 | 6 | CH_din_180 | 5 | 5 | 0.00000000410822 |
| Fragaria x ananassa | Fvb4-1 | 6 | CH_fan_559 | 4 | 5 | 0.0000046818 |
| Hydrangea macrophylla | Hma1.2p1_0897F.1 | 6 | CH_hma_198 | 4 | 7 | 0.00000293769 |
| Hydrangea macrophylla | Hma1.2p1_0478F.1 | 6 | CH_hma_54 | 5 | 5 | 0.000000000112283 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_377 | 8 | 52 | 0.0000000157103 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_237 | 5 | 21 | 0.000000708612 |
| Olea europaea | chr2 | 6 | CH_oeu_200 | 5 | 13 | 0.0000016329 |
| Olea europaea | chr9 | 6 | CH_oeu_569 | 3 | 3 | 0.000325154 |
| Olea europaea | scaffold797 | 6 | CH_oeu_570 | 3 | 3 | 0.000325154 |
| Olea europaea | chr20 | 6 | CH_oeu_60 | 8 | 33 | 0.000000000121452 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_525 | 3 | 3 | 0.0000723632 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_593 | 3 | 3 | 0.000275613 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_405 | 6 | 14 | 0.00000000124867 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_127 | 9 | 17 | 6.64806e-16 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_257 | 7 | 18 | 0.00000000021276 |
| Simmondsia chinensis | GWHAASQ00000005 | 6 | CH_sci_346 | 3 | 3 | 0.000213137 |
| Sapria himalayana | scaffold76_2129029 | 6 | CH_shi_558 | 3 | 9 | 0.000632794 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_661 | 3 | 3 | 0.000135573 |
| Trochodendron aralioides | group10 | 6 | CH_tar_929 | 3 | 3 | 0.000724743 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_386 | 4 | 7 | 0.0000122762 |
| Tripterygium wilfordii | NC_052240.1 | 6 | CH_twi_314 | 5 | 26 | 0.0000232301 |
| Utricularia gibba | unitig_749 | 6 | CH_ugi_104 | 3 | 3 | 0.0000409987 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_194 | 5 | 8 | 0.000000118928 |
| Zea mays | 1 | 6 | CH_zma_421 | 3 | 3 | 0.000286873 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |