Functional clusters
Information
- Type InterPro
- Description Chloramphenicol acetyltransferase-like domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_953 | 4 | 6 | 0.0000928117 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_349 | 6 | 75 | 0.0000208845 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 5 | CH_atr_358 | 4 | 7 | 0.000078528 |
| Amborella trichopoda | AmTr_v1.0_scaffold00035 | 5 | CH_atr_451 | 5 | 23 | 0.000216639 |
| Brassica carinata | ChrC04 | 5 | CH_bca_953 | 4 | 4 | 0.00000480776 |
| Brassica napus | A02 | 5 | CH_bna_1209 | 5 | 22 | 0.000270615 |
| Brassica oleracea | C2 | 5 | CH_bol_799 | 5 | 31 | 0.000499645 |
| Brassica rapa | A02 | 5 | CH_bra_361 | 5 | 19 | 0.0000730363 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 5 | CH_bvu_179 | 7 | 29 | 0.000000141702 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_83 | 7 | 8 | 0.00000000000182066 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_165 | 9 | 27 | 0.00000000014229 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_122 | 10 | 16 | 2.4031e-17 |
| Gossypium hirsutum | A06 | 5 | CH_ghi_718 | 5 | 12 | 0.0000124626 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_83 | 10 | 21 | 7.93124e-16 |
| Malus domestica | Chr17 | 5 | CH_mdo_905 | 4 | 6 | 0.0000964818 |
| Medicago truncatula | chr7 | 5 | CH_mtr_163 | 9 | 12 | 0.00000000000000130333 |
| Medicago truncatula | chr7 | 5 | CH_mtr_167 | 8 | 8 | 0.00000000000000166376 |
| Medicago truncatula | chr7 | 5 | CH_mtr_34 | 16 | 20 | 1.89069e-31 |
| Medicago truncatula | chr4 | 5 | CH_mtr_413 | 6 | 8 | 0.00000000352047 |
| Nicotiana tabacum | Nitab4.5_0000863 | 5 | CH_nta_301 | 3 | 3 | 0.000500654 |
| Nicotiana tabacum | Nitab4.5_0000123 | 5 | CH_nta_85 | 7 | 33 | 0.000000128009 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_167 | 7 | 15 | 0.000000000514022 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_90 | 7 | 9 | 0.00000000000146058 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_468 | 4 | 4 | 0.00000914061 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_710 | 5 | 19 | 0.00040181 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_869 | 6 | 26 | 0.0000117294 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_278 | 9 | 34 | 0.000000000555954 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_129 | 9 | 15 | 0.000000000000107962 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_405 | 6 | 19 | 0.00000753195 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_46 | 12 | 13 | 2.06318e-23 |
| Simmondsia chinensis | GWHAASQ00000015 | 5 | CH_sci_52 | 6 | 6 | 0.00000000000755119 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_249 | 5 | 5 | 0.000000010896 |
| Trochodendron aralioides | group5 | 5 | CH_tar_582 | 4 | 7 | 0.000112046 |
| Vanilla planifolia | CM028159.1 | 5 | CH_vpl_23 | 9 | 16 | 8.05699e-16 |
| Vitis vinifera | chr12 | 5 | CH_vvi_178 | 6 | 8 | 0.000000000518181 |
| Vitis vinifera | chr7 | 5 | CH_vvi_392 | 4 | 4 | 0.00000219673 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_953 | 4 | 6 | 0.0000928117 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_349 | 6 | 75 | 0.0000208845 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 6 | CH_atr_358 | 4 | 7 | 0.000078528 |
| Amborella trichopoda | AmTr_v1.0_scaffold00035 | 6 | CH_atr_451 | 5 | 23 | 0.000216639 |
| Brassica carinata | ChrC04 | 6 | CH_bca_953 | 4 | 4 | 0.00000480776 |
| Brassica napus | A02 | 6 | CH_bna_1209 | 5 | 22 | 0.000270615 |
| Brassica oleracea | C2 | 6 | CH_bol_799 | 5 | 31 | 0.000499645 |
| Brassica rapa | A02 | 6 | CH_bra_361 | 5 | 19 | 0.0000730363 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 6 | CH_bvu_179 | 7 | 29 | 0.000000141702 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_83 | 7 | 8 | 0.00000000000182066 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_165 | 9 | 27 | 0.00000000014229 |
| Fragaria x ananassa | Fvb3-3 | 6 | CH_fan_1113 | 4 | 8 | 0.000558063 |
| Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_186 | 7 | 13 | 0.000000000333481 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_122 | 10 | 16 | 2.4031e-17 |
| Gossypium hirsutum | A06 | 6 | CH_ghi_718 | 5 | 12 | 0.0000124626 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_83 | 10 | 21 | 7.93124e-16 |
| Malus domestica | Chr17 | 6 | CH_mdo_905 | 4 | 6 | 0.0000964818 |
| Medicago truncatula | chr7 | 6 | CH_mtr_163 | 9 | 12 | 0.00000000000000130333 |
| Medicago truncatula | chr7 | 6 | CH_mtr_167 | 8 | 8 | 0.00000000000000166376 |
| Medicago truncatula | chr7 | 6 | CH_mtr_34 | 16 | 20 | 1.89069e-31 |
| Medicago truncatula | chr4 | 6 | CH_mtr_413 | 6 | 8 | 0.00000000352047 |
| Nicotiana tabacum | Nitab4.5_0000863 | 6 | CH_nta_301 | 3 | 3 | 0.000500654 |
| Nicotiana tabacum | Nitab4.5_0000123 | 6 | CH_nta_85 | 7 | 33 | 0.000000128009 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_167 | 7 | 15 | 0.000000000514022 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_90 | 7 | 9 | 0.00000000000146058 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_468 | 4 | 4 | 0.00000914061 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_710 | 5 | 19 | 0.00040181 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_869 | 6 | 26 | 0.0000117294 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_278 | 9 | 34 | 0.000000000555954 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_129 | 9 | 15 | 0.000000000000107962 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_405 | 6 | 19 | 0.00000753195 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_46 | 12 | 13 | 2.06318e-23 |
| Simmondsia chinensis | GWHAASQ00000015 | 6 | CH_sci_52 | 6 | 6 | 0.00000000000755119 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_249 | 5 | 5 | 0.000000010896 |
| Trochodendron aralioides | group5 | 6 | CH_tar_582 | 4 | 7 | 0.000112046 |
| Vanilla planifolia | CM028159.1 | 6 | CH_vpl_23 | 9 | 16 | 8.05699e-16 |
| Vitis vinifera | chr12 | 6 | CH_vvi_178 | 6 | 8 | 0.000000000518181 |
| Vitis vinifera | chr7 | 6 | CH_vvi_392 | 4 | 4 | 0.00000219673 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |