Functional clusters
Information
- Type InterPro
- Description Dynamin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_17730_HRSCAF_17811 | 5 | CH_ama_86 | 3 | 3 | 0.00000909984 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_35 | 6 | 13 | 0.00000000000882141 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_75 | 5 | 9 | 0.000000000170523 |
| Brassica carinata | ChrB02 | 5 | CH_bca_396 | 4 | 4 | 0.0000000107634 |
| Brassica rapa | A01 | 5 | CH_bra_430 | 4 | 33 | 0.000168438 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_299 | 3 | 3 | 0.000020811 |
| Capsicum annuum | PGAv.1.6.scaffold1069 | 5 | CH_can_252 | 4 | 4 | 0.0000000149785 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_145 | 3 | 3 | 0.00000880495 |
| Coffea canephora | chr5 | 5 | CH_ccan_179 | 3 | 7 | 0.000000124063 |
| Coffea canephora | chr2 | 5 | CH_ccan_708 | 2 | 8 | 0.000809192 |
| Ceratophyllum demersum | 8 | 5 | CH_cde_175 | 3 | 4 | 0.0000497509 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_176 | 4 | 4 | 0.00000000180326 |
| Citrullus lanatus | CG_Chr09 | 5 | CH_cla_185 | 3 | 4 | 0.0000320935 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_504 | 3 | 4 | 0.000039561 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_461 | 3 | 4 | 0.0000362487 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_352 | 4 | 9 | 0.000000298987 |
| Gossypium hirsutum | D13 | 5 | CH_ghi_55 | 11 | 14 | 4.76015e-27 |
| Lupinus albus | Lalb_Chr17 | 5 | CH_lal_336 | 4 | 14 | 0.00000758048 |
| Malus domestica | Chr14 | 5 | CH_mdo_75 | 7 | 11 | 2.02926e-16 |
| Olea europaea | chr3 | 5 | CH_oeu_216 | 3 | 3 | 0.00000348764 |
| Quercus lobata | 5 | 5 | CH_qlo_344 | 6 | 9 | 0.0000000000000932218 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_602 | 5 | 18 | 0.000000196558 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_68 | 8 | 9 | 5.7827e-22 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_215 | 4 | 5 | 0.0000000224547 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_1471 | 3 | 3 | 0.000011662 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1472 | 3 | 3 | 0.000011662 |
| Solanum tuberosum | ST4.03ch11 | 5 | CH_stu_273 | 4 | 5 | 0.00000000782213 |
| Trochodendron aralioides | group16 | 5 | CH_tar_37 | 8 | 12 | 3.45137e-18 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_554 | 4 | 29 | 0.00027263 |
| Vanilla planifolia | CM028154.1 | 5 | CH_vpl_66 | 6 | 28 | 0.000000000229159 |
| Avicennia marina | ScioBoG_17730_HRSCAF_17811 | 6 | CH_ama_86 | 3 | 3 | 0.00000909984 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_35 | 6 | 13 | 0.00000000000882141 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_75 | 5 | 9 | 0.000000000170523 |
| Brassica carinata | ChrB02 | 6 | CH_bca_396 | 4 | 4 | 0.0000000107634 |
| Brassica rapa | A01 | 6 | CH_bra_430 | 4 | 33 | 0.000168438 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_299 | 3 | 3 | 0.000020811 |
| Capsicum annuum | PGAv.1.6.scaffold1069 | 6 | CH_can_252 | 4 | 4 | 0.0000000149785 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_145 | 3 | 3 | 0.00000880495 |
| Coffea canephora | chr5 | 6 | CH_ccan_179 | 3 | 7 | 0.000000124063 |
| Coffea canephora | chr2 | 6 | CH_ccan_708 | 2 | 8 | 0.000809192 |
| Ceratophyllum demersum | 8 | 6 | CH_cde_175 | 3 | 4 | 0.0000497509 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_176 | 4 | 4 | 0.00000000180326 |
| Citrullus lanatus | CG_Chr09 | 6 | CH_cla_185 | 3 | 4 | 0.0000320935 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_504 | 3 | 4 | 0.000039561 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_461 | 3 | 4 | 0.0000362487 |
| Fragaria x ananassa | Fvb7-3 | 6 | CH_fan_1276 | 3 | 7 | 0.000899193 |
| Fragaria x ananassa | Fvb4-4 | 6 | CH_fan_709 | 3 | 3 | 0.0000257386 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_352 | 4 | 9 | 0.000000298987 |
| Gossypium hirsutum | D13 | 6 | CH_ghi_55 | 11 | 14 | 4.76015e-27 |
| Lupinus albus | Lalb_Chr17 | 6 | CH_lal_336 | 4 | 14 | 0.00000758048 |
| Malus domestica | Chr14 | 6 | CH_mdo_75 | 7 | 11 | 2.02926e-16 |
| Olea europaea | chr3 | 6 | CH_oeu_216 | 3 | 3 | 0.00000348764 |
| Quercus lobata | 5 | 6 | CH_qlo_344 | 6 | 9 | 0.0000000000000932218 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_602 | 5 | 18 | 0.000000196558 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_68 | 8 | 9 | 5.7827e-22 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_215 | 4 | 5 | 0.0000000224547 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_1471 | 3 | 3 | 0.000011662 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1472 | 3 | 3 | 0.000011662 |
| Solanum tuberosum | ST4.03ch11 | 6 | CH_stu_273 | 4 | 5 | 0.00000000782213 |
| Trochodendron aralioides | group16 | 6 | CH_tar_37 | 8 | 12 | 3.45137e-18 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_554 | 4 | 29 | 0.00027263 |
| Vanilla planifolia | CM028154.1 | 6 | CH_vpl_66 | 6 | 28 | 0.000000000229159 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |