Functional clusters
Information
- Type InterPro
- Description Serine aminopeptidase, S33
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 5 | CH_aar_60 | 6 | 6 | 0.000000000000191347 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_573 | 3 | 4 | 0.00034584 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_391 | 3 | 4 | 0.000044989 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1386 | 3 | 3 | 0.0000918784 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1712 | 3 | 4 | 0.000367242 |
| Brassica napus | C03 | 5 | CH_bna_1530 | 3 | 5 | 0.000886119 |
| Brassica napus | C06 | 5 | CH_bna_1531 | 3 | 5 | 0.000886119 |
| Capsicum annuum | PGAv.1.6.scaffold798 | 5 | CH_can_161 | 5 | 5 | 0.0000000000282062 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_454 | 3 | 3 | 0.0000511702 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4191 | 5 | CH_cqu_633 | 3 | 3 | 0.0000415605 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_476 | 3 | 3 | 0.0000920592 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_446 | 3 | 3 | 0.0000650426 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_491 | 3 | 3 | 0.000029841 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_492 | 3 | 3 | 0.000029841 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_614 | 4 | 4 | 0.0000000105564 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_181 | 5 | 7 | 0.000000000270018 |
| Glycine max | Gm13 | 5 | CH_gma_598 | 3 | 3 | 0.0000777742 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_1107 | 3 | 5 | 0.00052395 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_422 | 4 | 4 | 0.0000000506947 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_403 | 4 | 4 | 0.0000000337417 |
| Medicago truncatula | chr2 | 5 | CH_mtr_706 | 4 | 9 | 0.00000154019 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_397 | 4 | 14 | 0.0000104488 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_390 | 3 | 3 | 0.0000342901 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1180 | 3 | 6 | 0.000575018 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_809 | 3 | 3 | 0.0000287949 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_230 | 4 | 4 | 0.0000000623084 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_177 | 6 | 6 | 0.00000000000000304743 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_535 | 3 | 3 | 0.0000309232 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_256 | 3 | 3 | 0.0000991265 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_493 | 3 | 3 | 0.0000230586 |
| Trochodendron aralioides | group0 | 5 | CH_tar_829 | 3 | 5 | 0.000455368 |
| Vigna mungo | CM024074.1 | 5 | CH_vmu_300 | 3 | 3 | 0.0000528319 |
| Aethionema arabicum | LG-5 | 6 | CH_aar_60 | 6 | 6 | 0.000000000000191347 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_573 | 3 | 4 | 0.00034584 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_391 | 3 | 4 | 0.000044989 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1386 | 3 | 3 | 0.0000918784 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1712 | 3 | 4 | 0.000367242 |
| Brassica napus | C03 | 6 | CH_bna_1530 | 3 | 5 | 0.000886119 |
| Brassica napus | C06 | 6 | CH_bna_1531 | 3 | 5 | 0.000886119 |
| Capsicum annuum | PGAv.1.6.scaffold798 | 6 | CH_can_161 | 5 | 5 | 0.0000000000282062 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_454 | 3 | 3 | 0.0000511702 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4191 | 6 | CH_cqu_633 | 3 | 3 | 0.0000415605 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_476 | 3 | 3 | 0.0000920592 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_446 | 3 | 3 | 0.0000650426 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_491 | 3 | 3 | 0.000029841 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_492 | 3 | 3 | 0.000029841 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_614 | 4 | 4 | 0.0000000105564 |
| Fragaria x ananassa | Fvb1-1 | 6 | CH_fan_1136 | 3 | 5 | 0.00062315 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_778 | 3 | 3 | 0.0000623923 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_779 | 3 | 3 | 0.0000623923 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_181 | 5 | 7 | 0.000000000270018 |
| Glycine max | Gm13 | 6 | CH_gma_598 | 3 | 3 | 0.0000777742 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_1107 | 3 | 5 | 0.00052395 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_422 | 4 | 4 | 0.0000000506947 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_403 | 4 | 4 | 0.0000000337417 |
| Medicago truncatula | chr2 | 6 | CH_mtr_706 | 4 | 9 | 0.00000154019 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_397 | 4 | 14 | 0.0000104488 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_390 | 3 | 3 | 0.0000342901 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1180 | 3 | 6 | 0.000575018 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_809 | 3 | 3 | 0.0000287949 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_230 | 4 | 4 | 0.0000000623084 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_177 | 6 | 6 | 0.00000000000000304743 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_535 | 3 | 3 | 0.0000309232 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_256 | 3 | 3 | 0.0000991265 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_493 | 3 | 3 | 0.0000230586 |
| Trochodendron aralioides | group0 | 6 | CH_tar_829 | 3 | 5 | 0.000455368 |
| Vigna mungo | CM024074.1 | 6 | CH_vmu_300 | 3 | 3 | 0.0000528319 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |