Functional clusters
Information
- Type InterPro
- Description Defensin-like protein 20-27
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-11 | 5 | CH_aar_140 | 3 | 3 | 0.0000000499425 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1672 | 2 | 2 | 0.000320646 |
| Brassica oleracea | C2 | 5 | CH_bol_609 | 2 | 2 | 0.0000980584 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_578 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_263 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_136 | 3 | 3 | 0.0000000104528 |
| Durio zibethinus | NW_019167893.1 | 5 | CH_dzi_158 | 3 | 4 | 0.0000000128893 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_324 | 3 | 6 | 0.000000636138 |
| Gossypium hirsutum | A02 | 5 | CH_ghi_410 | 3 | 3 | 0.0000000213895 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_411 | 3 | 3 | 0.0000000213895 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_72 | 5 | 5 | 6.19636e-17 |
| Prunus persica | Pp06 | 5 | CH_ppe_225 | 5 | 46 | 0.000000000317927 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_691 | 2 | 2 | 0.000346801 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_188 | 4 | 5 | 0.00000000595398 |
| Phaseolus vulgaris | Chr08 | 5 | CH_pvu_309 | 4 | 14 | 0.00000118844 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_95 | 5 | 5 | 0.000000000000437648 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_263 | 3 | 3 | 0.0000000206706 |
| Aethionema arabicum | LG-11 | 6 | CH_aar_140 | 3 | 3 | 0.0000000499425 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1672 | 2 | 2 | 0.000320646 |
| Brassica oleracea | C2 | 6 | CH_bol_609 | 2 | 2 | 0.0000980584 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_578 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_263 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_136 | 3 | 3 | 0.0000000104528 |
| Durio zibethinus | NW_019167893.1 | 6 | CH_dzi_158 | 3 | 4 | 0.0000000128893 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_324 | 3 | 6 | 0.000000636138 |
| Gossypium hirsutum | A02 | 6 | CH_ghi_410 | 3 | 3 | 0.0000000213895 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_411 | 3 | 3 | 0.0000000213895 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_72 | 5 | 5 | 6.19636e-17 |
| Prunus persica | Pp06 | 6 | CH_ppe_225 | 5 | 46 | 0.000000000317927 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_691 | 2 | 2 | 0.000346801 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_188 | 4 | 5 | 0.00000000595398 |
| Phaseolus vulgaris | Chr08 | 6 | CH_pvu_309 | 4 | 14 | 0.00000118844 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_95 | 5 | 5 | 0.000000000000437648 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_263 | 3 | 3 | 0.0000000206706 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |