Functional clusters
Information
- Type InterPro
- Description Aluminum-activated malate transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_446 | 3 | 4 | 0.0000108509 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 5 | CH_amhyb_113 | 4 | 12 | 0.000000291662 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_782 | 3 | 3 | 0.0000122872 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_783 | 3 | 3 | 0.0000122872 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 5 | CH_arhy_784 | 3 | 3 | 0.0000122872 |
| Brassica carinata | ChrC07 | 5 | CH_bca_327 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrB06 | 5 | CH_bca_966 | 3 | 3 | 0.00000532583 |
| Brassica carinata | ChrB03 | 5 | CH_bca_967 | 3 | 3 | 0.00000532583 |
| Brassica napus | C08 | 5 | CH_bna_345 | 4 | 5 | 0.0000000078882 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 5 | CH_bvu_323 | 3 | 8 | 0.0000483121 |
| Camellia sinensis var. sinensis | Chr11 | 5 | CH_camsi_330 | 5 | 15 | 0.00000000201989 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 5 | CH_can_84 | 7 | 9 | 6.98237e-17 |
| Corylus avellana | 6 | 5 | CH_cav_239 | 4 | 8 | 0.00000017199 |
| Corylus avellana | 4 | 5 | CH_cav_270 | 4 | 10 | 0.000000515549 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_218 | 4 | 4 | 0.00000000118418 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_191 | 4 | 7 | 0.0000000225612 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_48 | 9 | 12 | 2.1214e-22 |
| Citrullus lanatus | CG_Chr03 | 5 | CH_cla_176 | 3 | 5 | 0.0000259534 |
| Corchorus olitorius | AWUE01013496.1 | 5 | CH_col_81 | 3 | 3 | 0.00000256002 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 5 | CH_cqu_500 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 5 | CH_cqu_501 | 3 | 3 | 0.00000447901 |
| Cucumis sativus L. | chr1 | 5 | CH_csa_76 | 5 | 5 | 0.000000000000468807 |
| Davidia involucrata | GWHABJS00000007 | 5 | CH_din_46 | 7 | 9 | 3.43821e-18 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1012 | 3 | 5 | 0.0000349172 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_398 | 5 | 6 | 0.00000000000326691 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_633 | 3 | 7 | 0.000369443 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_358 | 4 | 10 | 0.000000393309 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_527 | 3 | 5 | 0.0000424484 |
| Glycine max | Gm20 | 5 | CH_gma_499 | 3 | 3 | 0.0000117904 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_590 | 3 | 3 | 0.00000255354 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_236 | 5 | 6 | 0.00000000000358129 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_533 | 3 | 4 | 0.0000129316 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_71 | 7 | 10 | 9.60751e-18 |
| Magnolia biondii | Chr07 | 5 | CH_mbi_818 | 3 | 6 | 0.0000805875 |
| Malus domestica | Chr03 | 5 | CH_mdo_806 | 3 | 4 | 0.0000282556 |
| Malus domestica | Chr16 | 5 | CH_mdo_807 | 3 | 4 | 0.0000282556 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1358 | 3 | 11 | 0.000641816 |
| Medicago truncatula | chr8 | 5 | CH_mtr_772 | 3 | 3 | 0.00000389956 |
| Olea europaea | chr12 | 5 | CH_oeu_105 | 4 | 5 | 0.0000000110502 |
| Prunus persica | Pp06 | 5 | CH_ppe_421 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_1047 | 3 | 8 | 0.000232317 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_841 | 4 | 31 | 0.000043848 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_272 | 4 | 5 | 0.0000000173299 |
| Quercus lobata | 1 | 5 | CH_qlo_74 | 10 | 12 | 7.88634e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_136 | 8 | 24 | 2.71441e-17 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_385 | 3 | 3 | 0.00000353989 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_612 | 3 | 8 | 0.000197924 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_176 | 4 | 4 | 0.00000000229717 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_136 | 9 | 12 | 2.90685e-24 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1405 | 3 | 3 | 0.00000473458 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_376 | 6 | 9 | 0.0000000000000281164 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_228 | 4 | 4 | 0.00000000073483 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_255 | 4 | 6 | 0.0000000126336 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_45 | 6 | 7 | 0.0000000000000395081 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_552 | 3 | 5 | 0.000152041 |
| Vitis vinifera | chr13 | 5 | CH_vvi_469 | 3 | 5 | 0.000039458 |
| Acer truncatum | chr3 | 6 | CH_acertr_446 | 3 | 4 | 0.0000108509 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_8 | 6 | CH_amhyb_113 | 4 | 12 | 0.000000291662 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_782 | 3 | 3 | 0.0000122872 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_783 | 3 | 3 | 0.0000122872 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.08 | 6 | CH_arhy_784 | 3 | 3 | 0.0000122872 |
| Brassica carinata | ChrC07 | 6 | CH_bca_327 | 4 | 4 | 0.00000000193544 |
| Brassica carinata | ChrB06 | 6 | CH_bca_966 | 3 | 3 | 0.00000532583 |
| Brassica carinata | ChrB03 | 6 | CH_bca_967 | 3 | 3 | 0.00000532583 |
| Brassica napus | C08 | 6 | CH_bna_345 | 4 | 5 | 0.0000000078882 |
| Beta vulgaris | Chr7_EL10_PGA_scaffold5 | 6 | CH_bvu_323 | 3 | 8 | 0.0000483121 |
| Camellia sinensis var. sinensis | Chr11 | 6 | CH_camsi_330 | 5 | 15 | 0.00000000201989 |
| Capsicum annuum | PGAv.1.6.scaffold574 | 6 | CH_can_84 | 7 | 9 | 6.98237e-17 |
| Corylus avellana | 6 | 6 | CH_cav_239 | 4 | 8 | 0.00000017199 |
| Corylus avellana | 4 | 6 | CH_cav_270 | 4 | 10 | 0.000000515549 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_218 | 4 | 4 | 0.00000000118418 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_191 | 4 | 7 | 0.0000000225612 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_48 | 9 | 12 | 2.1214e-22 |
| Citrullus lanatus | CG_Chr03 | 6 | CH_cla_176 | 3 | 5 | 0.0000259534 |
| Cucumis melo | chr02 | 6 | CH_cme_169 | 4 | 11 | 0.000000209772 |
| Corchorus olitorius | AWUE01013496.1 | 6 | CH_col_81 | 3 | 3 | 0.00000256002 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2465 | 6 | CH_cqu_500 | 3 | 3 | 0.00000447901 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2716 | 6 | CH_cqu_501 | 3 | 3 | 0.00000447901 |
| Cucumis sativus L. | chr1 | 6 | CH_csa_76 | 5 | 5 | 0.000000000000468807 |
| Davidia involucrata | GWHABJS00000007 | 6 | CH_din_46 | 7 | 9 | 3.43821e-18 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1012 | 3 | 5 | 0.0000349172 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_398 | 5 | 6 | 0.00000000000326691 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_633 | 3 | 7 | 0.000369443 |
| Fragaria x ananassa | Fvb3-4 | 6 | CH_fan_393 | 4 | 7 | 0.000000422096 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_690 | 3 | 3 | 0.0000213978 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_358 | 4 | 10 | 0.000000393309 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_527 | 3 | 5 | 0.0000424484 |
| Glycine max | Gm20 | 6 | CH_gma_499 | 3 | 3 | 0.0000117904 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_590 | 3 | 3 | 0.00000255354 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_236 | 5 | 6 | 0.00000000000358129 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_533 | 3 | 4 | 0.0000129316 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_71 | 7 | 10 | 9.60751e-18 |
| Magnolia biondii | Chr07 | 6 | CH_mbi_818 | 3 | 6 | 0.0000805875 |
| Malus domestica | Chr03 | 6 | CH_mdo_806 | 3 | 4 | 0.0000282556 |
| Malus domestica | Chr16 | 6 | CH_mdo_807 | 3 | 4 | 0.0000282556 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1358 | 3 | 11 | 0.000641816 |
| Medicago truncatula | chr8 | 6 | CH_mtr_772 | 3 | 3 | 0.00000389956 |
| Olea europaea | chr12 | 6 | CH_oeu_105 | 4 | 5 | 0.0000000110502 |
| Prunus persica | Pp06 | 6 | CH_ppe_421 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_1047 | 3 | 8 | 0.000232317 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_841 | 4 | 31 | 0.000043848 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_272 | 4 | 5 | 0.0000000173299 |
| Quercus lobata | 1 | 6 | CH_qlo_74 | 10 | 12 | 7.88634e-28 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_136 | 8 | 24 | 2.71441e-17 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_385 | 3 | 3 | 0.00000353989 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_612 | 3 | 8 | 0.000197924 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_176 | 4 | 4 | 0.00000000229717 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_136 | 9 | 12 | 2.90685e-24 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1405 | 3 | 3 | 0.00000473458 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_376 | 6 | 9 | 0.0000000000000281164 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_228 | 4 | 4 | 0.00000000073483 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_255 | 4 | 6 | 0.0000000126336 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_45 | 6 | 7 | 0.0000000000000395081 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_552 | 3 | 5 | 0.000152041 |
| Vitis vinifera | chr13 | 6 | CH_vvi_469 | 3 | 5 | 0.000039458 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |