Functional clusters
Information
- Type InterPro
- Description Polyketide cyclase/dehydrase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 5 | CH_acertr_425 | 3 | 3 | 0.00000608328 |
| Acer truncatum | chr7 | 5 | CH_acertr_85 | 5 | 5 | 0.00000000000158751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 5 | CH_amhyb_162 | 3 | 3 | 0.00000386882 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_236 | 3 | 3 | 0.00000438992 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_250 | 4 | 4 | 0.00000000276923 |
| Corchorus olitorius | AWUE01017542.1 | 5 | CH_col_96 | 3 | 3 | 0.00000716807 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_235 | 4 | 10 | 0.0000000406564 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_153 | 9 | 12 | 6.98816e-21 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_21 | 18 | 28 | 2.38357e-44 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_423 | 3 | 3 | 0.00000236862 |
| Hydrangea macrophylla | Hma1.2p1_0049F.1 | 5 | CH_hma_31 | 5 | 5 | 0.00000000000228725 |
| Magnolia biondii | Chr01 | 5 | CH_mbi_618 | 3 | 6 | 0.0000059416 |
| Malus domestica | Chr08 | 5 | CH_mdo_370 | 4 | 5 | 0.0000000103444 |
| Malus domestica | Chr15 | 5 | CH_mdo_681 | 3 | 3 | 0.00000496124 |
| Prunus persica | Pp01 | 5 | CH_ppe_467 | 3 | 4 | 0.00000734342 |
| Populus trichocarpa | Chr06 | 5 | CH_ptr_497 | 3 | 4 | 0.000022843 |
| Quercus lobata | 12 | 5 | CH_qlo_636 | 4 | 6 | 0.00000000442636 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_729 | 3 | 3 | 0.00000133499 |
| Striga asiatica | scaffold103 | 5 | CH_sas_96 | 3 | 5 | 0.00000703708 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_445 | 3 | 4 | 0.00000806993 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_464 | 3 | 3 | 0.00000449071 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_465 | 3 | 3 | 0.00000449071 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_447 | 3 | 4 | 0.0000117112 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_21 | 6 | 6 | 3.9695e-16 |
| Acer truncatum | chr10 | 6 | CH_acertr_425 | 3 | 3 | 0.00000608328 |
| Acer truncatum | chr7 | 6 | CH_acertr_85 | 5 | 5 | 0.00000000000158751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 6 | CH_amhyb_162 | 3 | 3 | 0.00000386882 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_236 | 3 | 3 | 0.00000438992 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_250 | 4 | 4 | 0.00000000276923 |
| Corchorus olitorius | AWUE01017542.1 | 6 | CH_col_96 | 3 | 3 | 0.00000716807 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_235 | 4 | 10 | 0.0000000406564 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_153 | 9 | 12 | 6.98816e-21 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_21 | 18 | 28 | 2.38357e-44 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_676 | 3 | 3 | 0.0000175747 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_423 | 3 | 3 | 0.00000236862 |
| Hydrangea macrophylla | Hma1.2p1_0049F.1 | 6 | CH_hma_31 | 5 | 5 | 0.00000000000228725 |
| Magnolia biondii | Chr01 | 6 | CH_mbi_618 | 3 | 6 | 0.0000059416 |
| Malus domestica | Chr08 | 6 | CH_mdo_370 | 4 | 5 | 0.0000000103444 |
| Malus domestica | Chr15 | 6 | CH_mdo_681 | 3 | 3 | 0.00000496124 |
| Prunus persica | Pp01 | 6 | CH_ppe_467 | 3 | 4 | 0.00000734342 |
| Populus trichocarpa | Chr06 | 6 | CH_ptr_497 | 3 | 4 | 0.000022843 |
| Quercus lobata | 12 | 6 | CH_qlo_636 | 4 | 6 | 0.00000000442636 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_729 | 3 | 3 | 0.00000133499 |
| Striga asiatica | scaffold103 | 6 | CH_sas_96 | 3 | 5 | 0.00000703708 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_445 | 3 | 4 | 0.00000806993 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_464 | 3 | 3 | 0.00000449071 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_465 | 3 | 3 | 0.00000449071 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_447 | 3 | 4 | 0.0000117112 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_21 | 6 | 6 | 3.9695e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |