Functional clusters
Information
- Type InterPro
- Description LysM domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 5 | CH_atr_307 | 3 | 3 | 0.00000917316 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_355 | 3 | 4 | 0.0000294803 |
| Cicer arietinum L. | Ca_LG3_v3 | 5 | CH_car_161 | 3 | 3 | 0.0000160924 |
| Chara braunii | BFEA01000738 | 5 | CH_cbr_32 | 6 | 14 | 0.0000000000383074 |
| Chara braunii | BFEA01000571 | 5 | CH_cbr_65 | 4 | 4 | 0.0000000195938 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_587 | 3 | 4 | 0.000147411 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_314 | 4 | 5 | 0.0000000626559 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_782 | 5 | 19 | 0.000000441102 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_770 | 3 | 3 | 0.0000347675 |
| Hydrangea macrophylla | Hma1.2p1_0565F.1 | 5 | CH_hma_224 | 3 | 4 | 0.0000122127 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_318 | 4 | 4 | 0.00000000140384 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1362 | 3 | 9 | 0.00051951 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1492 | 3 | 3 | 0.0000160015 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1898 | 3 | 4 | 0.0000639715 |
| Solanum tuberosum | ST4.03ch09 | 5 | CH_stu_470 | 3 | 3 | 0.00000606639 |
| Vigna mungo | CM024070.1 | 5 | CH_vmu_281 | 3 | 3 | 0.0000205165 |
| Amborella trichopoda | AmTr_v1.0_scaffold00022 | 6 | CH_atr_307 | 3 | 3 | 0.00000917316 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_355 | 3 | 4 | 0.0000294803 |
| Cicer arietinum L. | Ca_LG3_v3 | 6 | CH_car_161 | 3 | 3 | 0.0000160924 |
| Chara braunii | BFEA01000738 | 6 | CH_cbr_32 | 6 | 14 | 0.0000000000383074 |
| Chara braunii | BFEA01000571 | 6 | CH_cbr_65 | 4 | 4 | 0.0000000195938 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_587 | 3 | 4 | 0.000147411 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_314 | 4 | 5 | 0.0000000626559 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_782 | 5 | 19 | 0.000000441102 |
| Fragaria x ananassa | Fvb1-3 | 6 | CH_fan_1028 | 3 | 5 | 0.000390298 |
| Fragaria x ananassa | Fvb1-1 | 6 | CH_fan_874 | 3 | 4 | 0.000156202 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_770 | 3 | 3 | 0.0000347675 |
| Hydrangea macrophylla | Hma1.2p1_0565F.1 | 6 | CH_hma_224 | 3 | 4 | 0.0000122127 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_318 | 4 | 4 | 0.00000000140384 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1362 | 3 | 9 | 0.00051951 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1492 | 3 | 3 | 0.0000160015 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1898 | 3 | 4 | 0.0000639715 |
| Solanum tuberosum | ST4.03ch09 | 6 | CH_stu_470 | 3 | 3 | 0.00000606639 |
| Vigna mungo | CM024070.1 | 6 | CH_vmu_281 | 3 | 3 | 0.0000205165 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |