Functional clusters

Information

  • Type InterPro
  • Description Squalene cyclase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 5 CH_aar_194 3 3 0.00000206013
Aethionema arabicum LG-8 5 CH_aar_223 3 4 0.00000823789
Acer truncatum chr7 5 CH_acertr_369 3 3 0.00000123008
Actinidia chinensis Lachesis_group6 5 CH_ach_164 3 3 0.00000126593
Avicennia marina ScioBoG_102840_HRSCAF_103099 5 CH_ama_73 3 3 0.00000245339
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 5 CH_amhyb_153 3 3 0.0000023383
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 5 CH_amhyb_82 4 6 0.0000000132786
Aquilegia oxysepala CHR01 5 CH_aox_249 3 4 0.00000636601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_28 14 22 1.22356e-36
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 5 CH_arhy_49 11 17 6.43988e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_790 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_791 3 3 0.0000132834
Arabidopsis thaliana Chr1 5 CH_ath_119 6 71 0.000000000308785
Brassica carinata ChrB06 5 CH_bca_813 3 3 0.0000015765
Brassica napus C05 5 CH_bna_1290 3 14 0.000371859
Brassica oleracea C5 5 CH_bol_645 3 15 0.000160177
Camellia sinensis var. sinensis Chr8 5 CH_camsi_1 30 47 2.36581e-79
Camellia sinensis var. sinensis Chr14 5 CH_camsi_378 5 10 0.00000000904113
Capsicum annuum PGAv.1.6.scaffold594 5 CH_can_20 10 16 1.01829e-29
Cicer arietinum L. Ca_LG8_v3 5 CH_car_45 5 36 0.0000000057868
Corylus avellana 7 5 CH_cav_169 5 10 0.00000000276745
Corylus avellana 11 5 CH_cav_193 4 4 0.0000000143684
Corylus avellana 1 5 CH_cav_80 6 8 0.000000000000224442
Chara braunii BFEA01000197 5 CH_cbr_193 2 2 0.0000719269
Coffea canephora chr3 5 CH_ccan_126 4 17 0.00000000824163
Citrus clementina scaffold_4 5 CH_ccl_96 6 7 0.00000000000000100402
Cardamine hirsuta Chr2 5 CH_chi_34 8 8 1.79593e-22
Cardamine hirsuta Chr5 5 CH_chi_435 3 4 0.0000277657
Carya illinoinensis Chr01 5 CH_cil_90 7 11 1.71154e-16
Carica papaya supercontig_10 5 CH_cpa_207 3 3 0.0000022369
Chenopodium quinoa C_Quinoa_Scaffold_1677 5 CH_cqu_139 5 6 0.00000000000763028
Chenopodium quinoa C_Quinoa_Scaffold_2487 5 CH_cqu_162 5 8 0.0000000000711619
Chenopodium quinoa C_Quinoa_Scaffold_2716 5 CH_cqu_264 4 5 0.000000014125
Capsella rubella scaffold_2 5 CH_cru_128 4 4 0.0000000000820908
Cucumis sativus L. chr2 5 CH_csa_60 6 9 0.0000000000000131397
Daucus carota DCARv2_Chr5 5 CH_dca_755 2 2 0.000956663
Davidia involucrata GWHABJS00000003 5 CH_din_101 5 5 0.00000000000054569
Davidia involucrata GWHABJS00000017 5 CH_din_353 3 3 0.00000363566
Eucalyptus grandis Chr02 5 CH_egr_1427 3 9 0.000989681
Gossypium hirsutum D06 5 CH_ghi_187 5 6 0.000000000000162059
Glycine max Gm03 5 CH_gma_501 3 6 0.0000123549
Gossypium raimondii Chr10 5 CH_gra_79 6 7 2.70419e-16
Hydrangea macrophylla Hma1.2p1_0286F.1 5 CH_hma_32 6 18 0.0000000000032547
Lotus japonicus chr3 5 CH_lja_101 5 17 0.000000000958448
Lonicera japonica GWHAAZE00000005 5 CH_lonja_835 5 75 0.000105377
Lonicera japonica GWHAAZE00000007 5 CH_lonja_993 3 6 0.000279297
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_272 4 5 0.00000000986667
Lactuca sativa Lsat_1_v8_lg_6 5 CH_lsa_553 3 4 0.0000180656
Malus domestica Chr17 5 CH_mdo_39 8 9 2.5219e-21
Malus domestica Chr09 5 CH_mdo_478 4 7 0.00000017994
Malus domestica Chr17 5 CH_mdo_76 8 24 2.04833e-16
Medicago truncatula chr8 5 CH_mtr_241 6 17 0.000000000000603812
Nelumbo nucifera chr8 5 CH_nnu_26 8 30 3.32151e-18
Oryza sativa ssp. japonica chr02 5 CH_osa_122 5 10 0.000000000011636
Oryza sativa ssp. japonica chr11 5 CH_osa_393 3 7 0.00000920062
Punica granatum NC_045134.1 5 CH_pgr_150 5 24 0.00000000126966
Prunus persica Pp03 5 CH_ppe_37 9 12 2.13903e-25
Papaver somniferum NC_039364.1 5 CH_pso_310 4 7 0.00000000120158
Quercus lobata 5 5 CH_qlo_166 12 55 1.0877e-19
Quercus lobata 11 5 CH_qlo_27 17 28 4.35974e-39
Quercus lobata 5 5 CH_qlo_643 5 8 0.00000000698969
Quercus lobata 5 5 CH_qlo_726 5 10 0.0000000313898
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_24 16 54 2.99552e-35
Rhododendron simsii chr03 5 CH_rsi_126 7 11 6.48469e-16
Rhododendron simsii chr02 5 CH_rsi_95 9 26 1.7291e-18
Salvia bowleyana GWHASIU00000002 5 CH_sbo_232 4 7 0.00000000209738
Simmondsia chinensis GWHAASQ00000006 5 CH_sci_135 3 4 0.000000173977
Sechium edule LG03 5 CH_sed_193 3 3 0.000000641322
Sequoiadendron giganteum chr5 5 CH_sgi_498 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch12 5 CH_sly_364 3 3 0.000000620117
Selaginella moellendorffii scaffold_98 5 CH_smo_327 2 2 0.000560224
Schrenkiella parvula ch5-7 5 CH_spa_115 3 3 0.000000185978
Solanum pennellii Spenn-ch12 5 CH_spe_350 3 4 0.000000997006
Solanum tuberosum ST4.03ch12 5 CH_stu_78 6 10 1.4025e-16
Selenicereus undatus Scaffold_33675 5 CH_sun_3 12 30 1.11731e-28
Selenicereus undatus Scaffold_19641 5 CH_sun_68 4 5 0.0000000176045
Trochodendron aralioides group10 5 CH_tar_58 7 30 0.0000000000000128328
Trifolium pratense Tp57577_TGAC_v2_scaf_349 5 CH_tpr_173 4 5 0.00000001548
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_420 3 4 0.0000233695
Tripterygium wilfordii NC_052232.1 5 CH_twi_366 3 6 0.0000912723
Utricularia gibba unitig_578 5 CH_ugi_16 5 8 0.0000000000244791
Utricularia gibba unitig_748 5 CH_ugi_8 7 12 3.26294e-17
Vigna mungo CM024075.1 5 CH_vmu_50 6 17 0.000000000000537002
Vitis vinifera chr10 5 CH_vvi_18 15 18 3.1136e-34
Vitis vinifera chr9 5 CH_vvi_2 29 46 4.06377e-65
Vitis vinifera chr4 5 CH_vvi_330 4 4 0.000000521554
Vitis vinifera chr10_random 5 CH_vvi_331 4 4 0.000000521554
Zea mays 1 5 CH_zma_230 3 3 0.00000219616
Zea mays 8 5 CH_zma_231 3 3 0.00000219616
Aethionema arabicum LG-4 6 CH_aar_194 3 3 0.00000206013
Aethionema arabicum LG-8 6 CH_aar_223 3 4 0.00000823789
Acer truncatum chr7 6 CH_acertr_369 3 3 0.00000123008
Actinidia chinensis Lachesis_group6 6 CH_ach_164 3 3 0.00000126593
Avicennia marina ScioBoG_102840_HRSCAF_103099 6 CH_ama_73 3 3 0.00000245339
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 6 CH_amhyb_153 3 3 0.0000023383
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 6 CH_amhyb_82 4 6 0.0000000132786
Aquilegia oxysepala CHR01 6 CH_aox_249 3 4 0.00000636601
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_28 14 22 1.22356e-36
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 6 CH_arhy_49 11 17 6.43988e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_790 3 3 0.0000132834
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_791 3 3 0.0000132834
Arabidopsis thaliana Chr1 6 CH_ath_119 6 71 0.000000000308785
Brassica carinata ChrB06 6 CH_bca_813 3 3 0.0000015765
Brassica napus C05 6 CH_bna_1290 3 14 0.000371859
Brassica oleracea C5 6 CH_bol_645 3 15 0.000160177
Camellia sinensis var. sinensis Chr8 6 CH_camsi_1 30 47 2.36581e-79
Camellia sinensis var. sinensis Chr14 6 CH_camsi_378 5 10 0.00000000904113
Capsicum annuum PGAv.1.6.scaffold594 6 CH_can_20 10 16 1.01829e-29
Cicer arietinum L. Ca_LG8_v3 6 CH_car_45 5 36 0.0000000057868
Corylus avellana 7 6 CH_cav_169 5 10 0.00000000276745
Corylus avellana 11 6 CH_cav_193 4 4 0.0000000143684
Corylus avellana 1 6 CH_cav_80 6 8 0.000000000000224442
Chara braunii BFEA01000197 6 CH_cbr_193 2 2 0.0000719269
Coffea canephora chr3 6 CH_ccan_126 4 17 0.00000000824163
Citrus clementina scaffold_4 6 CH_ccl_96 6 7 0.00000000000000100402
Cardamine hirsuta Chr2 6 CH_chi_34 8 8 1.79593e-22
Cardamine hirsuta Chr5 6 CH_chi_435 3 4 0.0000277657
Carya illinoinensis Chr01 6 CH_cil_90 7 11 1.71154e-16
Cucumis melo chr09 6 CH_cme_149 4 9 0.000000055488
Carica papaya supercontig_10 6 CH_cpa_207 3 3 0.0000022369
Chenopodium quinoa C_Quinoa_Scaffold_1677 6 CH_cqu_139 5 6 0.00000000000763028
Chenopodium quinoa C_Quinoa_Scaffold_2487 6 CH_cqu_162 5 8 0.0000000000711619
Chenopodium quinoa C_Quinoa_Scaffold_2716 6 CH_cqu_264 4 5 0.000000014125
Capsella rubella scaffold_2 6 CH_cru_128 4 4 0.0000000000820908
Cucumis sativus L. chr2 6 CH_csa_60 6 9 0.0000000000000131397
Daucus carota DCARv2_Chr5 6 CH_dca_755 2 2 0.000956663
Davidia involucrata GWHABJS00000003 6 CH_din_101 5 5 0.00000000000054569
Davidia involucrata GWHABJS00000017 6 CH_din_353 3 3 0.00000363566
Eucalyptus grandis Chr02 6 CH_egr_1427 3 9 0.000989681
Gossypium hirsutum D06 6 CH_ghi_187 5 6 0.000000000000162059
Glycine max Gm03 6 CH_gma_501 3 6 0.0000123549
Gossypium raimondii Chr10 6 CH_gra_79 6 7 2.70419e-16
Hydrangea macrophylla Hma1.2p1_0286F.1 6 CH_hma_32 6 18 0.0000000000032547
Lotus japonicus chr3 6 CH_lja_101 5 17 0.000000000958448
Lonicera japonica GWHAAZE00000005 6 CH_lonja_835 5 75 0.000105377
Lonicera japonica GWHAAZE00000007 6 CH_lonja_993 3 6 0.000279297
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_272 4 5 0.00000000986667
Lactuca sativa Lsat_1_v8_lg_6 6 CH_lsa_553 3 4 0.0000180656
Malus domestica Chr17 6 CH_mdo_39 8 9 2.5219e-21
Malus domestica Chr09 6 CH_mdo_478 4 7 0.00000017994
Malus domestica Chr17 6 CH_mdo_76 8 24 2.04833e-16
Medicago truncatula chr8 6 CH_mtr_241 6 17 0.000000000000603812
Nelumbo nucifera chr8 6 CH_nnu_26 8 30 3.32151e-18
Oryza sativa ssp. japonica chr02 6 CH_osa_122 5 10 0.000000000011636
Oryza sativa ssp. japonica chr11 6 CH_osa_393 3 7 0.00000920062
Punica granatum NC_045134.1 6 CH_pgr_150 5 24 0.00000000126966
Prunus persica Pp03 6 CH_ppe_37 9 12 2.13903e-25
Papaver somniferum NC_039364.1 6 CH_pso_310 4 7 0.00000000120158
Quercus lobata 5 6 CH_qlo_166 12 55 1.0877e-19
Quercus lobata 11 6 CH_qlo_27 17 28 4.35974e-39
Quercus lobata 5 6 CH_qlo_643 5 8 0.00000000698969
Quercus lobata 5 6 CH_qlo_726 5 10 0.0000000313898
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_24 16 54 2.99552e-35
Rhododendron simsii chr03 6 CH_rsi_126 7 11 6.48469e-16
Rhododendron simsii chr02 6 CH_rsi_95 9 26 1.7291e-18
Salvia bowleyana GWHASIU00000002 6 CH_sbo_232 4 7 0.00000000209738
Simmondsia chinensis GWHAASQ00000006 6 CH_sci_135 3 4 0.000000173977
Sechium edule LG03 6 CH_sed_193 3 3 0.000000641322
Sequoiadendron giganteum chr5 6 CH_sgi_498 4 5 0.00000000000173422
Solanum lycopersicum SL4.0ch12 6 CH_sly_364 3 3 0.000000620117
Selaginella moellendorffii scaffold_98 6 CH_smo_327 2 2 0.000560224
Schrenkiella parvula ch5-7 6 CH_spa_115 3 3 0.000000185978
Solanum pennellii Spenn-ch12 6 CH_spe_350 3 4 0.000000997006
Solanum tuberosum ST4.03ch12 6 CH_stu_78 6 10 1.4025e-16
Selenicereus undatus Scaffold_33675 6 CH_sun_3 12 30 1.11731e-28
Selenicereus undatus Scaffold_19641 6 CH_sun_68 4 5 0.0000000176045
Trochodendron aralioides group10 6 CH_tar_58 7 30 0.0000000000000128328
Trifolium pratense Tp57577_TGAC_v2_scaf_349 6 CH_tpr_173 4 5 0.00000001548
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_420 3 4 0.0000233695
Tripterygium wilfordii NC_052232.1 6 CH_twi_366 3 6 0.0000912723
Utricularia gibba unitig_578 6 CH_ugi_16 5 8 0.0000000000244791
Utricularia gibba unitig_748 6 CH_ugi_8 7 12 3.26294e-17
Vigna mungo CM024075.1 6 CH_vmu_50 6 17 0.000000000000537002
Vitis vinifera chr10 6 CH_vvi_18 15 18 3.1136e-34
Vitis vinifera chr9 6 CH_vvi_2 29 46 4.06377e-65
Vitis vinifera chr4 6 CH_vvi_330 4 4 0.000000521554
Vitis vinifera chr10_random 6 CH_vvi_331 4 4 0.000000521554
Zea mays 1 6 CH_zma_230 3 3 0.00000219616
Zea mays 8 6 CH_zma_231 3 3 0.00000219616

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001