Functional clusters
Information
- Type InterPro
- Description Strictosidine synthase, conserved region
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_63 | 5 | 5 | 0.000000000000240116 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_331 | 3 | 3 | 0.00000297347 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_332 | 3 | 3 | 0.00000297347 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_374 | 3 | 4 | 0.0000118899 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_155 | 4 | 7 | 0.00000000336895 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_288 | 3 | 4 | 0.00000224043 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_309 | 3 | 5 | 0.00000560027 |
| Brassica carinata | ChrC02 | 5 | CH_bca_120 | 6 | 11 | 0.0000000000002824 |
| Brassica carinata | ChrC08 | 5 | CH_bca_204 | 5 | 7 | 0.0000000000316367 |
| Brassica carinata | ChrC03 | 5 | CH_bca_357 | 4 | 4 | 0.00000000361652 |
| Brassica napus | C04 | 5 | CH_bna_151 | 6 | 13 | 0.00000000000307842 |
| Brassica napus | A02 | 5 | CH_bna_454 | 4 | 6 | 0.000000113588 |
| Brassica napus | A04 | 5 | CH_bna_538 | 4 | 8 | 0.000000529651 |
| Brassica napus | A07 | 5 | CH_bna_842 | 3 | 3 | 0.0000151218 |
| Brassica napus | C02 | 5 | CH_bna_843 | 3 | 3 | 0.0000151218 |
| Brassica napus | C06 | 5 | CH_bna_844 | 3 | 3 | 0.0000151218 |
| Brassica oleracea | C4 | 5 | CH_bol_370 | 4 | 14 | 0.00000214022 |
| Brassica oleracea | C6 | 5 | CH_bol_404 | 3 | 3 | 0.00000525013 |
| Brassica rapa | A07 | 5 | CH_bra_261 | 3 | 3 | 0.00000425765 |
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_518 | 5 | 46 | 0.000000135319 |
| Capsicum annuum | PGAv.1.6.scaffold803 | 5 | CH_can_229 | 4 | 6 | 0.00000000836853 |
| Coffea canephora | chr2 | 5 | CH_ccan_271 | 4 | 89 | 0.00000533215 |
| Coffea canephora | chr6 | 5 | CH_ccan_654 | 3 | 39 | 0.000541705 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_108 | 7 | 11 | 0.00000000000000519685 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_230 | 6 | 25 | 0.00000000336115 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_262 | 4 | 4 | 0.00000002476 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_293 | 3 | 3 | 0.00000189286 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_182 | 4 | 4 | 0.00000000303185 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_173 | 4 | 4 | 0.00000000358854 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_394 | 3 | 4 | 0.0000261626 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_43 | 7 | 8 | 3.06351e-18 |
| Daucus carota | DCARv2_Chr6 | 5 | CH_dca_279 | 3 | 3 | 0.00000174505 |
| Durio zibethinus | NW_019167960.1 | 5 | CH_dzi_317 | 3 | 5 | 0.0000117245 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_113 | 5 | 12 | 0.0000000000481548 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_404 | 3 | 4 | 0.00000439671 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_1124 | 3 | 6 | 0.0000994675 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_376 | 5 | 5 | 0.00000000000102348 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_916 | 3 | 3 | 0.00000497906 |
| Eutrema salsugineum | scaffold_19 | 5 | CH_esa_116 | 4 | 4 | 0.00000000132621 |
| Eutrema salsugineum | scaffold_9 | 5 | CH_esa_117 | 4 | 4 | 0.00000000132621 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_429 | 3 | 3 | 0.00000291523 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_694 | 3 | 3 | 0.00000830981 |
| Lupinus albus | Lalb_Chr25 | 5 | CH_lal_238 | 3 | 3 | 0.000000495806 |
| Lotus japonicus | chr4 | 5 | CH_lja_363 | 3 | 6 | 0.0000337213 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_841 | 3 | 4 | 0.000117329 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_554 | 5 | 80 | 0.00000197755 |
| Medicago truncatula | chr7 | 5 | CH_mtr_268 | 5 | 6 | 0.00000000000681141 |
| Medicago truncatula | chr4 | 5 | CH_mtr_435 | 5 | 17 | 0.00000000699684 |
| Medicago truncatula | chr2 | 5 | CH_mtr_983 | 3 | 5 | 0.0000581983 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_402 | 3 | 7 | 0.0000649573 |
| Quercus lobata | 6 | 5 | CH_qlo_269 | 6 | 7 | 0.00000000000000107251 |
| Quercus lobata | 6 | 5 | CH_qlo_289 | 6 | 8 | 0.00000000000000428879 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_488 | 3 | 3 | 0.00000137423 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1246 | 3 | 3 | 0.000000783163 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_190 | 4 | 4 | 0.000000000433758 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_165 | 3 | 3 | 0.00000338481 |
| Schrenkiella parvula | ch5-7 | 5 | CH_spa_66 | 4 | 4 | 0.00000000146586 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_357 | 3 | 3 | 0.00000108022 |
| Selenicereus undatus | Scaffold_3410 | 5 | CH_sun_231 | 3 | 14 | 0.000161142 |
| Trochodendron aralioides | group4 | 5 | CH_tar_355 | 3 | 3 | 0.00000154633 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_468 | 3 | 5 | 0.0000229976 |
| Utricularia gibba | unitig_749 | 5 | CH_ugi_379 | 2 | 2 | 0.000820479 |
| Vitis vinifera | chr10 | 5 | CH_vvi_243 | 4 | 4 | 0.0000000270343 |
| Vitis vinifera | chr4 | 5 | CH_vvi_43 | 9 | 11 | 6.03142e-22 |
| Vitis vinifera | chr11 | 5 | CH_vvi_456 | 3 | 3 | 0.0000284314 |
| Zea mays | 1 | 5 | CH_zma_122 | 4 | 5 | 0.00000000971237 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_63 | 5 | 5 | 0.000000000000240116 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_331 | 3 | 3 | 0.00000297347 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_332 | 3 | 3 | 0.00000297347 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_374 | 3 | 4 | 0.0000118899 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_155 | 4 | 7 | 0.00000000336895 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_288 | 3 | 4 | 0.00000224043 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_309 | 3 | 5 | 0.00000560027 |
| Brassica carinata | ChrC02 | 6 | CH_bca_120 | 6 | 11 | 0.0000000000002824 |
| Brassica carinata | ChrC08 | 6 | CH_bca_204 | 5 | 7 | 0.0000000000316367 |
| Brassica carinata | ChrC03 | 6 | CH_bca_357 | 4 | 4 | 0.00000000361652 |
| Brassica napus | C04 | 6 | CH_bna_151 | 6 | 13 | 0.00000000000307842 |
| Brassica napus | A02 | 6 | CH_bna_454 | 4 | 6 | 0.000000113588 |
| Brassica napus | A04 | 6 | CH_bna_538 | 4 | 8 | 0.000000529651 |
| Brassica napus | A07 | 6 | CH_bna_842 | 3 | 3 | 0.0000151218 |
| Brassica napus | C02 | 6 | CH_bna_843 | 3 | 3 | 0.0000151218 |
| Brassica napus | C06 | 6 | CH_bna_844 | 3 | 3 | 0.0000151218 |
| Brassica oleracea | C4 | 6 | CH_bol_370 | 4 | 14 | 0.00000214022 |
| Brassica oleracea | C6 | 6 | CH_bol_404 | 3 | 3 | 0.00000525013 |
| Brassica rapa | A07 | 6 | CH_bra_261 | 3 | 3 | 0.00000425765 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_518 | 5 | 46 | 0.000000135319 |
| Capsicum annuum | PGAv.1.6.scaffold803 | 6 | CH_can_229 | 4 | 6 | 0.00000000836853 |
| Coffea canephora | chr2 | 6 | CH_ccan_271 | 4 | 89 | 0.00000533215 |
| Coffea canephora | chr6 | 6 | CH_ccan_654 | 3 | 39 | 0.000541705 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_108 | 7 | 11 | 0.00000000000000519685 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_230 | 6 | 25 | 0.00000000336115 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_262 | 4 | 4 | 0.00000002476 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_293 | 3 | 3 | 0.00000189286 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_182 | 4 | 4 | 0.00000000303185 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_173 | 4 | 4 | 0.00000000358854 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_394 | 3 | 4 | 0.0000261626 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_43 | 7 | 8 | 3.06351e-18 |
| Daucus carota | DCARv2_Chr6 | 6 | CH_dca_279 | 3 | 3 | 0.00000174505 |
| Durio zibethinus | NW_019167960.1 | 6 | CH_dzi_317 | 3 | 5 | 0.0000117245 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_113 | 5 | 12 | 0.0000000000481548 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_404 | 3 | 4 | 0.00000439671 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_1124 | 3 | 6 | 0.0000994675 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_376 | 5 | 5 | 0.00000000000102348 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_916 | 3 | 3 | 0.00000497906 |
| Eutrema salsugineum | scaffold_19 | 6 | CH_esa_116 | 4 | 4 | 0.00000000132621 |
| Eutrema salsugineum | scaffold_9 | 6 | CH_esa_117 | 4 | 4 | 0.00000000132621 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_429 | 3 | 3 | 0.00000291523 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_694 | 3 | 3 | 0.00000830981 |
| Lupinus albus | Lalb_Chr25 | 6 | CH_lal_238 | 3 | 3 | 0.000000495806 |
| Lotus japonicus | chr4 | 6 | CH_lja_363 | 3 | 6 | 0.0000337213 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_841 | 3 | 4 | 0.000117329 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_554 | 5 | 80 | 0.00000197755 |
| Medicago truncatula | chr7 | 6 | CH_mtr_268 | 5 | 6 | 0.00000000000681141 |
| Medicago truncatula | chr4 | 6 | CH_mtr_435 | 5 | 17 | 0.00000000699684 |
| Medicago truncatula | chr2 | 6 | CH_mtr_983 | 3 | 5 | 0.0000581983 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_402 | 3 | 7 | 0.0000649573 |
| Quercus lobata | 6 | 6 | CH_qlo_269 | 6 | 7 | 0.00000000000000107251 |
| Quercus lobata | 6 | 6 | CH_qlo_289 | 6 | 8 | 0.00000000000000428879 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_488 | 3 | 3 | 0.00000137423 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1246 | 3 | 3 | 0.000000783163 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_190 | 4 | 4 | 0.000000000433758 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_165 | 3 | 3 | 0.00000338481 |
| Schrenkiella parvula | ch5-7 | 6 | CH_spa_66 | 4 | 4 | 0.00000000146586 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_357 | 3 | 3 | 0.00000108022 |
| Selenicereus undatus | Scaffold_3410 | 6 | CH_sun_231 | 3 | 14 | 0.000161142 |
| Trochodendron aralioides | group4 | 6 | CH_tar_355 | 3 | 3 | 0.00000154633 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_468 | 3 | 5 | 0.0000229976 |
| Utricularia gibba | unitig_749 | 6 | CH_ugi_379 | 2 | 2 | 0.000820479 |
| Vitis vinifera | chr10 | 6 | CH_vvi_243 | 4 | 4 | 0.0000000270343 |
| Vitis vinifera | chr4 | 6 | CH_vvi_43 | 9 | 11 | 6.03142e-22 |
| Vitis vinifera | chr11 | 6 | CH_vvi_456 | 3 | 3 | 0.0000284314 |
| Zea mays | 1 | 6 | CH_zma_122 | 4 | 5 | 0.00000000971237 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |