Functional clusters
Information
- Type InterPro
- Description PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 5 | CH_acertr_518 | 4 | 20 | 0.0000536015 |
| Camellia sinensis var. sinensis | Chr4 | 5 | CH_camsi_1252 | 4 | 27 | 0.000330479 |
| Cardamine hirsuta | Chr2 | 5 | CH_chi_130 | 6 | 11 | 0.0000000000180952 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_1128 | 3 | 5 | 0.000103898 |
| Magnolia biondii | Chr10 | 5 | CH_mbi_826 | 3 | 5 | 0.000103393 |
| Quercus lobata | 11 | 5 | CH_qlo_1081 | 3 | 3 | 0.0000080928 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_1036 | 5 | 72 | 0.0000608977 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_652 | 6 | 74 | 0.000000449937 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_1379 | 3 | 3 | 0.00000344948 |
| Sapria himalayana | scaffold60_3140063 | 5 | CH_shi_238 | 3 | 7 | 0.0000490468 |
| Tripterygium wilfordii | NC_052246.1 | 5 | CH_twi_294 | 3 | 3 | 0.0000107234 |
| Acer truncatum | chr3 | 6 | CH_acertr_518 | 4 | 20 | 0.0000536015 |
| Camellia sinensis var. sinensis | Chr4 | 6 | CH_camsi_1252 | 4 | 27 | 0.000330479 |
| Cardamine hirsuta | Chr2 | 6 | CH_chi_130 | 6 | 11 | 0.0000000000180952 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_1128 | 3 | 5 | 0.000103898 |
| Magnolia biondii | Chr10 | 6 | CH_mbi_826 | 3 | 5 | 0.000103393 |
| Quercus lobata | 11 | 6 | CH_qlo_1081 | 3 | 3 | 0.0000080928 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_1036 | 5 | 72 | 0.0000608977 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_652 | 6 | 74 | 0.000000449937 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_1379 | 3 | 3 | 0.00000344948 |
| Sapria himalayana | scaffold60_3140063 | 6 | CH_shi_238 | 3 | 7 | 0.0000490468 |
| Tripterygium wilfordii | NC_052246.1 | 6 | CH_twi_294 | 3 | 3 | 0.0000107234 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |