Functional clusters
Information
- Type InterPro
- Description Laccase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Capsicum annuum | PGAv.1.6.scaffold1010 | 5 | CH_can_407 | 3 | 3 | 0.00000372633 |
| Coffea canephora | chr6 | 5 | CH_ccan_487 | 3 | 28 | 0.000125182 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_493 | 3 | 4 | 0.0000818349 |
| Davidia involucrata | GWHABJS00000021 | 5 | CH_din_616 | 3 | 5 | 0.000204467 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_615 | 3 | 7 | 0.00022674 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_187 | 7 | 36 | 0.000000000338651 |
| Glycine max | Gm07 | 5 | CH_gma_546 | 3 | 3 | 0.0000373766 |
| Gossypium raimondii | Chr03 | 5 | CH_gra_542 | 3 | 4 | 0.0002282 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_448 | 4 | 5 | 0.000000106759 |
| Lonicera japonica | GWHAAZE00000008 | 5 | CH_lonja_257 | 5 | 5 | 0.0000000000420596 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_866 | 3 | 4 | 0.000167075 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_318 | 3 | 4 | 0.0000113566 |
| Olea europaea | chr1 | 5 | CH_oeu_269 | 3 | 4 | 0.0000263176 |
| Olea europaea | chr12 | 5 | CH_oeu_372 | 3 | 5 | 0.0000657671 |
| Oryza sativa ssp. japonica | chr01 | 5 | CH_osa_239 | 6 | 66 | 0.0000000612377 |
| Quercus lobata | 7 | 5 | CH_qlo_1819 | 3 | 6 | 0.000915887 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_139 | 11 | 67 | 5.80744e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_807 | 4 | 8 | 0.00000452278 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_313 | 4 | 6 | 0.00000015637 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_507 | 3 | 4 | 0.0000569654 |
| Zea mays | 3 | 5 | CH_zma_292 | 3 | 5 | 0.0000178347 |
| Capsicum annuum | PGAv.1.6.scaffold1010 | 6 | CH_can_407 | 3 | 3 | 0.00000372633 |
| Coffea canephora | chr6 | 6 | CH_ccan_487 | 3 | 28 | 0.000125182 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_493 | 3 | 4 | 0.0000818349 |
| Davidia involucrata | GWHABJS00000021 | 6 | CH_din_616 | 3 | 5 | 0.000204467 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_615 | 3 | 7 | 0.00022674 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_187 | 7 | 36 | 0.000000000338651 |
| Glycine max | Gm07 | 6 | CH_gma_546 | 3 | 3 | 0.0000373766 |
| Gossypium raimondii | Chr03 | 6 | CH_gra_542 | 3 | 4 | 0.0002282 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_448 | 4 | 5 | 0.000000106759 |
| Lonicera japonica | GWHAAZE00000008 | 6 | CH_lonja_257 | 5 | 5 | 0.0000000000420596 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_866 | 3 | 4 | 0.000167075 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_318 | 3 | 4 | 0.0000113566 |
| Olea europaea | chr1 | 6 | CH_oeu_269 | 3 | 4 | 0.0000263176 |
| Olea europaea | chr12 | 6 | CH_oeu_372 | 3 | 5 | 0.0000657671 |
| Oryza sativa ssp. japonica | chr01 | 6 | CH_osa_239 | 6 | 66 | 0.0000000612377 |
| Quercus lobata | 7 | 6 | CH_qlo_1819 | 3 | 6 | 0.000915887 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_139 | 11 | 67 | 5.80744e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_807 | 4 | 8 | 0.00000452278 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_313 | 4 | 6 | 0.00000015637 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_507 | 3 | 4 | 0.0000569654 |
| Zea mays | 3 | 6 | CH_zma_292 | 3 | 5 | 0.0000178347 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |