Functional clusters
Information
- Type InterPro
- Description Ionotropic glutamate receptor, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 5 | CH_arhy_985 | 3 | 7 | 0.000137484 |
| Brassica napus | C09 | 5 | CH_bna_1044 | 3 | 5 | 0.0000837475 |
| Brassica napus | A04 | 5 | CH_bna_296 | 5 | 13 | 0.00000000175298 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_1143 | 3 | 7 | 0.00022309 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_610 | 4 | 10 | 0.000000643987 |
| Coffea canephora | chr6 | 5 | CH_ccan_66 | 4 | 8 | 0.0000000000295222 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_345 | 3 | 3 | 0.00000980848 |
| Carya illinoinensis | Chr10 | 5 | CH_cil_156 | 6 | 9 | 0.00000000000280072 |
| Carya illinoinensis | Chr07 | 5 | CH_cil_191 | 5 | 5 | 0.0000000000359434 |
| Carya illinoinensis | Chr15 | 5 | CH_cil_340 | 4 | 5 | 0.000000186895 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_251 | 3 | 3 | 0.00000380481 |
| Durio zibethinus | NW_019167882.1 | 5 | CH_dzi_167 | 4 | 6 | 0.0000000267997 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_328 | 6 | 6 | 0.0000000000000593274 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_524 | 3 | 3 | 0.0000404488 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_623 | 3 | 3 | 0.00000245979 |
| Hydrangea macrophylla | Hma1.2p1_0328F.1 | 5 | CH_hma_189 | 3 | 3 | 0.00000155495 |
| Lotus japonicus | chr1 | 5 | CH_lja_267 | 3 | 3 | 0.00000168747 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_1109 | 3 | 6 | 0.000482699 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_429 | 5 | 31 | 0.00000124945 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_724 | 3 | 5 | 0.000160728 |
| Malus domestica | Chr15 | 5 | CH_mdo_460 | 4 | 6 | 0.000000113701 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_176 | 4 | 6 | 0.0000000445021 |
| Nelumbo nucifera | chr2 | 5 | CH_nnu_199 | 4 | 7 | 0.000000103798 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_103 | 5 | 7 | 0.00000000000642358 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_803 | 3 | 6 | 0.0000269531 |
| Populus trichocarpa | Chr06 | 5 | CH_ptr_240 | 5 | 8 | 0.00000000507704 |
| Populus trichocarpa | Chr04 | 5 | CH_ptr_555 | 3 | 3 | 0.0000663713 |
| Quercus lobata | 6 | 5 | CH_qlo_1061 | 3 | 3 | 0.00000615756 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_504 | 5 | 13 | 0.0000000371864 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_950 | 3 | 3 | 0.000038655 |
| Sechium edule | LG11 | 5 | CH_sed_254 | 3 | 3 | 0.00000870365 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_2160 | 4 | 18 | 0.000156326 |
| Trochodendron aralioides | group4 | 5 | CH_tar_235 | 4 | 5 | 0.0000000569381 |
| Tarenaya hassleriana | NW_010967707.1 | 5 | CH_tha_161 | 3 | 3 | 0.00000497635 |
| Vigna mungo | CM024069.1 | 5 | CH_vmu_308 | 3 | 7 | 0.0000626205 |
| Zea mays | 5 | 5 | CH_zma_270 | 3 | 5 | 0.00000862435 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.20 | 6 | CH_arhy_985 | 3 | 7 | 0.000137484 |
| Brassica napus | C09 | 6 | CH_bna_1044 | 3 | 5 | 0.0000837475 |
| Brassica napus | A04 | 6 | CH_bna_296 | 5 | 13 | 0.00000000175298 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_1143 | 3 | 7 | 0.00022309 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_610 | 4 | 10 | 0.000000643987 |
| Coffea canephora | chr6 | 6 | CH_ccan_66 | 4 | 8 | 0.0000000000295222 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_345 | 3 | 3 | 0.00000980848 |
| Carya illinoinensis | Chr10 | 6 | CH_cil_156 | 6 | 9 | 0.00000000000280072 |
| Carya illinoinensis | Chr07 | 6 | CH_cil_191 | 5 | 5 | 0.0000000000359434 |
| Carya illinoinensis | Chr15 | 6 | CH_cil_340 | 4 | 5 | 0.000000186895 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_251 | 3 | 3 | 0.00000380481 |
| Durio zibethinus | NW_019167882.1 | 6 | CH_dzi_167 | 4 | 6 | 0.0000000267997 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_328 | 6 | 6 | 0.0000000000000593274 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_289 | 4 | 5 | 0.0000000375238 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_524 | 3 | 3 | 0.0000404488 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_623 | 3 | 3 | 0.00000245979 |
| Hydrangea macrophylla | Hma1.2p1_0328F.1 | 6 | CH_hma_189 | 3 | 3 | 0.00000155495 |
| Lotus japonicus | chr1 | 6 | CH_lja_267 | 3 | 3 | 0.00000168747 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_1109 | 3 | 6 | 0.000482699 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_429 | 5 | 31 | 0.00000124945 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_724 | 3 | 5 | 0.000160728 |
| Malus domestica | Chr15 | 6 | CH_mdo_460 | 4 | 6 | 0.000000113701 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_176 | 4 | 6 | 0.0000000445021 |
| Nelumbo nucifera | chr2 | 6 | CH_nnu_199 | 4 | 7 | 0.000000103798 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_103 | 5 | 7 | 0.00000000000642358 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_803 | 3 | 6 | 0.0000269531 |
| Populus trichocarpa | Chr06 | 6 | CH_ptr_240 | 5 | 8 | 0.00000000507704 |
| Populus trichocarpa | Chr04 | 6 | CH_ptr_555 | 3 | 3 | 0.0000663713 |
| Quercus lobata | 6 | 6 | CH_qlo_1061 | 3 | 3 | 0.00000615756 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_504 | 5 | 13 | 0.0000000371864 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_950 | 3 | 3 | 0.000038655 |
| Sechium edule | LG11 | 6 | CH_sed_254 | 3 | 3 | 0.00000870365 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_2160 | 4 | 18 | 0.000156326 |
| Trochodendron aralioides | group4 | 6 | CH_tar_235 | 4 | 5 | 0.0000000569381 |
| Tarenaya hassleriana | NW_010967707.1 | 6 | CH_tha_161 | 3 | 3 | 0.00000497635 |
| Vigna mungo | CM024069.1 | 6 | CH_vmu_308 | 3 | 7 | 0.0000626205 |
| Zea mays | 5 | 6 | CH_zma_270 | 3 | 5 | 0.00000862435 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |