Functional clusters
Information
- Type InterPro
- Description Phosphatase PHOSPHO-type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_107 | 4 | 4 | 0.0000000000157678 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_90 | 6 | 27 | 0.000000000847483 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 5 | CH_atr_363 | 2 | 2 | 0.0000794407 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 5 | CH_bvu_170 | 3 | 3 | 0.000000102821 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_1484 | 2 | 3 | 0.000825341 |
| Capsicum annuum | PGAv.1.6.scaffold900 | 5 | CH_can_220 | 4 | 5 | 0.00000000418527 |
| Capsicum annuum | PGAv.1.6.scaffold1389 | 5 | CH_can_388 | 3 | 3 | 0.00000225218 |
| Capsicum annuum | PGAv.1.6.scaffold635 | 5 | CH_can_389 | 3 | 3 | 0.00000225218 |
| Corylus avellana | 11 | 5 | CH_cav_621 | 2 | 2 | 0.000230008 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_197 | 4 | 7 | 0.000000000289769 |
| Ceratophyllum demersum | 5 | 5 | CH_cde_161 | 4 | 46 | 0.0000167675 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_693 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr09 | 5 | CH_cla_86 | 3 | 3 | 0.0000000472204 |
| Corchorus olitorius | AWUE01020765.1 | 5 | CH_col_41 | 4 | 4 | 0.000000000373999 |
| Carica papaya | supercontig_131 | 5 | CH_cpa_473 | 2 | 2 | 0.000285198 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_591 | 2 | 2 | 0.000382665 |
| Durio zibethinus | NW_019167982.1 | 5 | CH_dzi_109 | 4 | 5 | 0.000000000313617 |
| Durio zibethinus | NW_019168037.1 | 5 | CH_dzi_388 | 3 | 10 | 0.0000463555 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_617 | 2 | 2 | 0.000134617 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1269 | 2 | 3 | 0.000351165 |
| Erythranthe guttata | scaffold_9 | 5 | CH_egut_307 | 3 | 4 | 0.000000318101 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_273 | 4 | 4 | 0.0000000000779617 |
| Gossypium hirsutum | D05 | 5 | CH_ghi_532 | 3 | 3 | 0.000000486611 |
| Glycine max | Gm07 | 5 | CH_gma_351 | 3 | 3 | 0.000000259319 |
| Glycine max | Gm08 | 5 | CH_gma_352 | 3 | 3 | 0.000000259319 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_145 | 4 | 4 | 0.00000000003236 |
| Lotus japonicus | chr3 | 5 | CH_lja_191 | 3 | 3 | 0.000000153406 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_360 | 3 | 5 | 0.000000158512 |
| Medicago truncatula | chr8 | 5 | CH_mtr_382 | 4 | 6 | 0.00000000102974 |
| Medicago truncatula | chr2 | 5 | CH_mtr_622 | 3 | 3 | 0.00000041781 |
| Olea europaea | chr18 | 5 | CH_oeu_518 | 2 | 2 | 0.000320273 |
| Prunus persica | Pp03 | 5 | CH_ppe_745 | 2 | 2 | 0.000447577 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_212 | 4 | 4 | 0.00000000000720448 |
| Papaver somniferum | NC_039367.1 | 5 | CH_pso_460 | 3 | 3 | 0.0000000913641 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_81 | 5 | 5 | 0.0000000000000122419 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1462 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_522 | 3 | 8 | 0.00000349664 |
| Simmondsia chinensis | GWHAASQ00000012 | 5 | CH_sci_374 | 2 | 2 | 0.000255428 |
| Sechium edule | LG07 | 5 | CH_sed_438 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_89 | 9 | 11 | 1.36081e-28 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_300 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_932 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_839 | 2 | 2 | 0.000667186 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_323 | 4 | 20 | 0.000000199474 |
| Tarenaya hassleriana | NW_010968263.1 | 5 | CH_tha_19 | 5 | 5 | 0.00000000000000374941 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_28 | 6 | 7 | 3.28904e-17 |
| Tripterygium wilfordii | NC_052238.1 | 5 | CH_twi_450 | 2 | 2 | 0.000334504 |
| Utricularia gibba | unitig_32 | 5 | CH_ugi_234 | 2 | 2 | 0.000246144 |
| Vitis vinifera | chr9 | 5 | CH_vvi_677 | 2 | 2 | 0.000456378 |
| Acer truncatum | chr1 | 6 | CH_acertr_107 | 4 | 4 | 0.0000000000157678 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_90 | 6 | 27 | 0.000000000847483 |
| Amborella trichopoda | AmTr_v1.0_scaffold00036 | 6 | CH_atr_363 | 2 | 2 | 0.0000794407 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 6 | CH_bvu_170 | 3 | 3 | 0.000000102821 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_1484 | 2 | 3 | 0.000825341 |
| Capsicum annuum | PGAv.1.6.scaffold900 | 6 | CH_can_220 | 4 | 5 | 0.00000000418527 |
| Capsicum annuum | PGAv.1.6.scaffold1389 | 6 | CH_can_388 | 3 | 3 | 0.00000225218 |
| Capsicum annuum | PGAv.1.6.scaffold635 | 6 | CH_can_389 | 3 | 3 | 0.00000225218 |
| Corylus avellana | 11 | 6 | CH_cav_621 | 2 | 2 | 0.000230008 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_197 | 4 | 7 | 0.000000000289769 |
| Ceratophyllum demersum | 5 | 6 | CH_cde_161 | 4 | 46 | 0.0000167675 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_693 | 2 | 2 | 0.000414723 |
| Citrullus lanatus | CG_Chr09 | 6 | CH_cla_86 | 3 | 3 | 0.0000000472204 |
| Cucumis melo | chr01 | 6 | CH_cme_352 | 2 | 2 | 0.000200133 |
| Corchorus olitorius | AWUE01020765.1 | 6 | CH_col_41 | 4 | 4 | 0.000000000373999 |
| Carica papaya | supercontig_131 | 6 | CH_cpa_473 | 2 | 2 | 0.000285198 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_591 | 2 | 2 | 0.000382665 |
| Durio zibethinus | NW_019167982.1 | 6 | CH_dzi_109 | 4 | 5 | 0.000000000313617 |
| Durio zibethinus | NW_019168037.1 | 6 | CH_dzi_388 | 3 | 10 | 0.0000463555 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_617 | 2 | 2 | 0.000134617 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1269 | 2 | 3 | 0.000351165 |
| Erythranthe guttata | scaffold_9 | 6 | CH_egut_307 | 3 | 4 | 0.000000318101 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_273 | 4 | 4 | 0.0000000000779617 |
| Gossypium hirsutum | D05 | 6 | CH_ghi_532 | 3 | 3 | 0.000000486611 |
| Glycine max | Gm07 | 6 | CH_gma_351 | 3 | 3 | 0.000000259319 |
| Glycine max | Gm08 | 6 | CH_gma_352 | 3 | 3 | 0.000000259319 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_145 | 4 | 4 | 0.00000000003236 |
| Lotus japonicus | chr3 | 6 | CH_lja_191 | 3 | 3 | 0.000000153406 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_360 | 3 | 5 | 0.000000158512 |
| Medicago truncatula | chr8 | 6 | CH_mtr_382 | 4 | 6 | 0.00000000102974 |
| Medicago truncatula | chr2 | 6 | CH_mtr_622 | 3 | 3 | 0.00000041781 |
| Olea europaea | chr18 | 6 | CH_oeu_518 | 2 | 2 | 0.000320273 |
| Prunus persica | Pp03 | 6 | CH_ppe_745 | 2 | 2 | 0.000447577 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_212 | 4 | 4 | 0.00000000000720448 |
| Papaver somniferum | NC_039367.1 | 6 | CH_pso_460 | 3 | 3 | 0.0000000913641 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_81 | 5 | 5 | 0.0000000000000122419 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1462 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_522 | 3 | 8 | 0.00000349664 |
| Simmondsia chinensis | GWHAASQ00000012 | 6 | CH_sci_374 | 2 | 2 | 0.000255428 |
| Sechium edule | LG07 | 6 | CH_sed_438 | 2 | 2 | 0.000428052 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_89 | 9 | 11 | 1.36081e-28 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_300 | 3 | 3 | 0.000000103353 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_932 | 2 | 2 | 0.000880411 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_839 | 2 | 2 | 0.000667186 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_323 | 4 | 20 | 0.000000199474 |
| Tarenaya hassleriana | NW_010968263.1 | 6 | CH_tha_19 | 5 | 5 | 0.00000000000000374941 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_28 | 6 | 7 | 3.28904e-17 |
| Tripterygium wilfordii | NC_052238.1 | 6 | CH_twi_450 | 2 | 2 | 0.000334504 |
| Utricularia gibba | unitig_32 | 6 | CH_ugi_234 | 2 | 2 | 0.000246144 |
| Vitis vinifera | chr9 | 6 | CH_vvi_677 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |