Functional clusters
Information
- Type InterPro
- Description Mechanosensitive ion channel MscS-like, plants/fungi
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 5 | CH_acertr_412 | 3 | 4 | 0.00000491909 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_111 | 4 | 8 | 0.000000227573 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_224 | 3 | 5 | 0.00000337578 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_627 | 2 | 2 | 0.000802177 |
| Amborella trichopoda | AmTr_v1.0_scaffold00048 | 5 | CH_atr_557 | 2 | 2 | 0.000476644 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_764 | 4 | 19 | 0.00000540654 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_75 | 5 | 7 | 0.000000000000737792 |
| Capsicum annuum | PGAv.1.6.scaffold401 | 5 | CH_can_331 | 3 | 4 | 0.000000409444 |
| Corylus avellana | 7 | 5 | CH_cav_279 | 3 | 3 | 0.000000740683 |
| Coffea canephora | chr10 | 5 | CH_ccan_714 | 2 | 5 | 0.000894346 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_383 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_601 | 2 | 2 | 0.000757346 |
| Carica papaya | supercontig_28 | 5 | CH_cpa_647 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 5 | CH_cqu_512 | 3 | 3 | 0.00000596416 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_206 | 3 | 3 | 0.000000365847 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_124 | 4 | 4 | 0.00000000141657 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_505 | 3 | 5 | 0.0000401444 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_578 | 3 | 6 | 0.0000802627 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_403 | 5 | 5 | 0.00000000000374116 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_404 | 5 | 5 | 0.00000000000374116 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_663 | 4 | 6 | 0.000000031942 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_150 | 4 | 4 | 0.0000000000429367 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_211 | 5 | 8 | 0.0000000000080197 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_945 | 3 | 9 | 0.000153317 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_619 | 4 | 17 | 0.00000739101 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 5 | CH_lsa_231 | 4 | 6 | 0.00000000128305 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_136 | 5 | 6 | 0.000000000000322185 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_215 | 5 | 15 | 0.000000000160984 |
| Medicago truncatula | chr3 | 5 | CH_mtr_711 | 3 | 7 | 0.00000177205 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_398 | 3 | 6 | 0.000048264 |
| Phaseolus vulgaris | Chr09 | 5 | CH_pvu_666 | 2 | 2 | 0.000734727 |
| Quercus lobata | CM012294 | 5 | CH_qlo_357 | 5 | 6 | 0.000000000000253221 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_360 | 4 | 4 | 0.000000000259456 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_342 | 4 | 7 | 0.000000013958 |
| Simmondsia chinensis | GWHAASQ00000006 | 5 | CH_sci_131 | 4 | 8 | 0.000000129564 |
| Sechium edule | LG13 | 5 | CH_sed_97 | 4 | 4 | 0.000000000778948 |
| Sequoiadendron giganteum | chr11 | 5 | CH_sgi_2005 | 2 | 2 | 0.000146145 |
| Selenicereus undatus | Scaffold_33680 | 5 | CH_sun_64 | 4 | 7 | 0.000000013286 |
| Trochodendron aralioides | group10 | 5 | CH_tar_939 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_656 | 3 | 15 | 0.000306781 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_368 | 3 | 8 | 0.000009621 |
| Acer truncatum | chr5 | 6 | CH_acertr_412 | 3 | 4 | 0.00000491909 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_111 | 4 | 8 | 0.000000227573 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_224 | 3 | 5 | 0.00000337578 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_627 | 2 | 2 | 0.000802177 |
| Amborella trichopoda | AmTr_v1.0_scaffold00048 | 6 | CH_atr_557 | 2 | 2 | 0.000476644 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_764 | 4 | 19 | 0.00000540654 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_75 | 5 | 7 | 0.000000000000737792 |
| Capsicum annuum | PGAv.1.6.scaffold401 | 6 | CH_can_331 | 3 | 4 | 0.000000409444 |
| Corylus avellana | 7 | 6 | CH_cav_279 | 3 | 3 | 0.000000740683 |
| Coffea canephora | chr10 | 6 | CH_ccan_714 | 2 | 5 | 0.000894346 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_383 | 2 | 2 | 0.000473878 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_601 | 2 | 2 | 0.000757346 |
| Cucumis melo | chr07 | 6 | CH_cme_234 | 3 | 6 | 0.00000467118 |
| Carica papaya | supercontig_28 | 6 | CH_cpa_647 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 6 | CH_cqu_512 | 3 | 3 | 0.00000596416 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_206 | 3 | 3 | 0.000000365847 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_124 | 4 | 4 | 0.00000000141657 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_505 | 3 | 5 | 0.0000401444 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_578 | 3 | 6 | 0.0000802627 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_403 | 5 | 5 | 0.00000000000374116 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_404 | 5 | 5 | 0.00000000000374116 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_663 | 4 | 6 | 0.000000031942 |
| Fragaria x ananassa | Fvb2-4 | 6 | CH_fan_403 | 4 | 19 | 0.00000053774 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_421 | 3 | 3 | 0.000000790914 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_150 | 4 | 4 | 0.0000000000429367 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_211 | 5 | 8 | 0.0000000000080197 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_945 | 3 | 9 | 0.000153317 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_619 | 4 | 17 | 0.00000739101 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 6 | CH_lsa_231 | 4 | 6 | 0.00000000128305 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_136 | 5 | 6 | 0.000000000000322185 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_215 | 5 | 15 | 0.000000000160984 |
| Medicago truncatula | chr3 | 6 | CH_mtr_711 | 3 | 7 | 0.00000177205 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_398 | 3 | 6 | 0.000048264 |
| Phaseolus vulgaris | Chr09 | 6 | CH_pvu_666 | 2 | 2 | 0.000734727 |
| Quercus lobata | CM012294 | 6 | CH_qlo_357 | 5 | 6 | 0.000000000000253221 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_360 | 4 | 4 | 0.000000000259456 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_342 | 4 | 7 | 0.000000013958 |
| Simmondsia chinensis | GWHAASQ00000006 | 6 | CH_sci_131 | 4 | 8 | 0.000000129564 |
| Sechium edule | LG13 | 6 | CH_sed_97 | 4 | 4 | 0.000000000778948 |
| Sequoiadendron giganteum | chr11 | 6 | CH_sgi_2005 | 2 | 2 | 0.000146145 |
| Selenicereus undatus | Scaffold_33680 | 6 | CH_sun_64 | 4 | 7 | 0.000000013286 |
| Trochodendron aralioides | group10 | 6 | CH_tar_939 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_656 | 3 | 15 | 0.000306781 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_368 | 3 | 8 | 0.000009621 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |