Functional clusters

Information

  • Type InterPro
  • Description High-affinity nitrate transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Coffea canephora chr4 5 CH_ccan_456 2 7 0.0000894361
Daucus carota DCARv2_Chr5 5 CH_dca_193 3 3 0.0000000610156
Daucus carota DCARv2_Chr6 5 CH_dca_691 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_634 2 2 0.000134617
Erythranthe guttata scaffold_17 5 CH_egut_302 3 3 0.000000278364
Fragaria vesca Fvb5 5 CH_fve_548 2 2 0.0000589102
Helianthus annuus HanXRQChr09 5 CH_han_234 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000005 5 CH_lonja_926 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_4 5 CH_lsa_188 4 6 0.0000000000916612
Marchantia polymorpha scaffold_20 5 CH_mpo_39 5 14 0.000000000124923
Medicago truncatula chr4 5 CH_mtr_930 2 2 0.0000410863
Nelumbo nucifera chr3 5 CH_nnu_452 2 2 0.000144505
Olea europaea scaffold307 5 CH_oeu_591 2 3 0.000480389
Petunia axillaris Peaxi162Scf00089 5 CH_pax_635 2 2 0.000422134
Petunia axillaris Peaxi162Scf00801 5 CH_pax_636 2 2 0.000422134
Papaver somniferum NC_039361.1 5 CH_pso_973 2 2 0.000135176
Populus trichocarpa Chr15 5 CH_ptr_623 2 2 0.0001734
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_455 3 4 0.00000000953543
Striga asiatica scaffold90 5 CH_sas_139 2 2 0.0000625371
Simmondsia chinensis GWHAASQ00000004 5 CH_sci_295 2 2 0.0000851426
Sequoiadendron giganteum chr6 5 CH_sgi_1735 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 5 CH_sly_596 2 2 0.0000586941
Solanum pennellii Spenn-ch03 5 CH_spe_554 2 2 0.000044479
Coffea canephora chr4 6 CH_ccan_456 2 7 0.0000894361
Daucus carota DCARv2_Chr5 6 CH_dca_193 3 3 0.0000000610156
Daucus carota DCARv2_Chr6 6 CH_dca_691 2 2 0.000637775
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_634 2 2 0.000134617
Erythranthe guttata scaffold_17 6 CH_egut_302 3 3 0.000000278364
Fragaria x ananassa Fvb5-1 6 CH_fan_1172 2 2 0.00066613
Fragaria x ananassa Fvb5-4 6 CH_fan_293 3 3 0.0000000431407
Fragaria x ananassa Fvb5-3 6 CH_fan_294 3 3 0.0000000431407
Fragaria vesca Fvb5 6 CH_fve_548 2 2 0.0000589102
Helianthus annuus HanXRQChr09 6 CH_han_234 4 5 0.0000000000302945
Lonicera japonica GWHAAZE00000005 6 CH_lonja_926 2 2 0.000179662
Lactuca sativa Lsat_1_v8_lg_4 6 CH_lsa_188 4 6 0.0000000000916612
Marchantia polymorpha scaffold_20 6 CH_mpo_39 5 14 0.000000000124923
Medicago truncatula chr4 6 CH_mtr_930 2 2 0.0000410863
Nelumbo nucifera chr3 6 CH_nnu_452 2 2 0.000144505
Olea europaea scaffold307 6 CH_oeu_591 2 3 0.000480389
Petunia axillaris Peaxi162Scf00089 6 CH_pax_635 2 2 0.000422134
Petunia axillaris Peaxi162Scf00801 6 CH_pax_636 2 2 0.000422134
Papaver somniferum NC_039361.1 6 CH_pso_973 2 2 0.000135176
Populus trichocarpa Chr15 6 CH_ptr_623 2 2 0.0001734
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_455 3 4 0.00000000953543
Striga asiatica scaffold90 6 CH_sas_139 2 2 0.0000625371
Simmondsia chinensis GWHAASQ00000004 6 CH_sci_295 2 2 0.0000851426
Sequoiadendron giganteum chr6 6 CH_sgi_1735 2 2 0.0000487151
Solanum lycopersicum SL4.0ch03 6 CH_sly_596 2 2 0.0000586941
Solanum pennellii Spenn-ch03 6 CH_spe_554 2 2 0.000044479

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001