Functional clusters
Information
- Type InterPro
- Description O-methyltransferase COMT-type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_115 | 4 | 17 | 0.00000077286 |
| Aethionema arabicum | LG-1 | 5 | CH_aar_125 | 5 | 10 | 0.0000000128129 |
| Aethionema arabicum | LG-4 | 5 | CH_aar_50 | 7 | 8 | 4.3005e-16 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_702 | 4 | 48 | 0.0007972 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 5 | CH_ama_17 | 4 | 4 | 0.000000000634661 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 5 | CH_arhy_238 | 6 | 6 | 0.00000000000103568 |
| Amborella trichopoda | AmTr_v1.0_scaffold00003 | 5 | CH_atr_26 | 9 | 15 | 5.62986e-23 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1628 | 3 | 4 | 0.000270621 |
| Brassica napus | C01 | 5 | CH_bna_1133 | 3 | 4 | 0.000176279 |
| Brassica napus | C07 | 5 | CH_bna_390 | 4 | 4 | 0.0000000319205 |
| Brassica oleracea | C1 | 5 | CH_bol_745 | 3 | 6 | 0.000341181 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_33 | 7 | 7 | 6.6731e-17 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_17 | 12 | 28 | 1.864e-24 |
| Capsicum annuum | PGAv.1.6.scaffold758 | 5 | CH_can_48 | 10 | 12 | 1.06925e-21 |
| Capsicum annuum | PGAv.1.6.scaffold637 | 5 | CH_can_80 | 8 | 9 | 4.73641e-17 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 5 | CH_can_97 | 7 | 7 | 0.00000000000000289965 |
| Corylus avellana | 11 | 5 | CH_cav_53 | 8 | 11 | 7.14568e-16 |
| Corylus avellana | 1 | 5 | CH_cav_91 | 7 | 11 | 0.000000000000808953 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_453 | 4 | 5 | 0.0000210988 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_73 | 10 | 13 | 1.93555e-18 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_75 | 7 | 9 | 0.0000000000000285736 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2858 | 5 | CH_cqu_708 | 3 | 3 | 0.000115242 |
| Cucumis sativus L. | chr7 | 5 | CH_csa_131 | 4 | 4 | 0.00000000676462 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_164 | 4 | 6 | 0.0000000212342 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_52 | 7 | 9 | 3.93743e-17 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_554 | 5 | 5 | 0.00000000240163 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_335 | 5 | 54 | 0.000000846635 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_231 | 4 | 4 | 0.00000000448688 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_281 | 4 | 5 | 0.0000000224242 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_742 | 3 | 8 | 0.000447938 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_436 | 4 | 4 | 0.0000000554947 |
| Helianthus annuus | HanXRQChr10 | 5 | CH_han_156 | 9 | 54 | 0.000000000000322325 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_6 | 20 | 52 | 9.90376e-43 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_207 | 6 | 10 | 0.00000000000064347 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_433 | 4 | 4 | 0.000000204717 |
| Magnolia biondii | Chr06 | 5 | CH_mbi_45 | 12 | 40 | 1.19801e-20 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_59 | 9 | 13 | 7.39352e-19 |
| Malus domestica | Chr14 | 5 | CH_mdo_425 | 5 | 11 | 0.000000050087 |
| Malus domestica | Chr07 | 5 | CH_mdo_68 | 8 | 12 | 6.78659e-17 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1017 | 5 | 40 | 0.0000954131 |
| Medicago truncatula | chr8 | 5 | CH_mtr_54 | 11 | 14 | 1.19526e-25 |
| Nelumbo nucifera | chr5 | 5 | CH_nnu_1 | 27 | 41 | 7.87234e-64 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_177 | 5 | 9 | 0.000000045244 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_65 | 9 | 15 | 1.43511e-19 |
| Quercus lobata | 8 | 5 | CH_qlo_233 | 8 | 9 | 2.94649e-17 |
| Quercus lobata | 8 | 5 | CH_qlo_267 | 9 | 20 | 8.81409e-16 |
| Quercus lobata | 10 | 5 | CH_qlo_714 | 7 | 38 | 0.0000000239239 |
| Simmondsia chinensis | GWHAASQ00000025 | 5 | CH_sci_122 | 5 | 9 | 0.000000104559 |
| Simmondsia chinensis | GWHAASQ00000023 | 5 | CH_sci_38 | 7 | 8 | 0.0000000000000239487 |
| Sechium edule | LG05 | 5 | CH_sed_261 | 3 | 3 | 0.0000117576 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_679 | 5 | 5 | 0.000000000273371 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_945 | 5 | 8 | 0.0000000152546 |
| Sapria himalayana | scaffold13_12996478 | 5 | CH_shi_205 | 4 | 67 | 0.0000021427 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_484 | 3 | 3 | 0.0000104593 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_362 | 4 | 5 | 0.00000020428 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_112 | 5 | 8 | 0.00000000036261 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_343 | 3 | 3 | 0.0000446817 |
| Vitis vinifera | chr15 | 5 | CH_vvi_288 | 4 | 4 | 0.000000162945 |
| Vitis vinifera | chr12 | 5 | CH_vvi_6 | 18 | 20 | 5.40906e-46 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_115 | 4 | 17 | 0.00000077286 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_125 | 5 | 10 | 0.0000000128129 |
| Aethionema arabicum | LG-4 | 6 | CH_aar_50 | 7 | 8 | 4.3005e-16 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_702 | 4 | 48 | 0.0007972 |
| Avicennia marina | ScioBoG_102839_HRSCAF_103093 | 6 | CH_ama_17 | 4 | 4 | 0.000000000634661 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 6 | CH_arhy_238 | 6 | 6 | 0.00000000000103568 |
| Amborella trichopoda | AmTr_v1.0_scaffold00003 | 6 | CH_atr_26 | 9 | 15 | 5.62986e-23 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1628 | 3 | 4 | 0.000270621 |
| Brassica napus | C01 | 6 | CH_bna_1133 | 3 | 4 | 0.000176279 |
| Brassica napus | C07 | 6 | CH_bna_390 | 4 | 4 | 0.0000000319205 |
| Brassica oleracea | C1 | 6 | CH_bol_745 | 3 | 6 | 0.000341181 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_33 | 7 | 7 | 6.6731e-17 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_17 | 12 | 28 | 1.864e-24 |
| Capsicum annuum | PGAv.1.6.scaffold758 | 6 | CH_can_48 | 10 | 12 | 1.06925e-21 |
| Capsicum annuum | PGAv.1.6.scaffold637 | 6 | CH_can_80 | 8 | 9 | 4.73641e-17 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 6 | CH_can_97 | 7 | 7 | 0.00000000000000289965 |
| Corylus avellana | 11 | 6 | CH_cav_53 | 8 | 11 | 7.14568e-16 |
| Corylus avellana | 1 | 6 | CH_cav_91 | 7 | 11 | 0.000000000000808953 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_453 | 4 | 5 | 0.0000210988 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_73 | 10 | 13 | 1.93555e-18 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_75 | 7 | 9 | 0.0000000000000285736 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2858 | 6 | CH_cqu_708 | 3 | 3 | 0.000115242 |
| Cucumis sativus L. | chr7 | 6 | CH_csa_131 | 4 | 4 | 0.00000000676462 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_164 | 4 | 6 | 0.0000000212342 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_52 | 7 | 9 | 3.93743e-17 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_554 | 5 | 5 | 0.00000000240163 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_335 | 5 | 54 | 0.000000846635 |
| Fragaria x ananassa | Fvb3-2 | 6 | CH_fan_846 | 3 | 3 | 0.000117358 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_231 | 4 | 4 | 0.00000000448688 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_281 | 4 | 5 | 0.0000000224242 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_742 | 3 | 8 | 0.000447938 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_436 | 4 | 4 | 0.0000000554947 |
| Helianthus annuus | HanXRQChr10 | 6 | CH_han_156 | 9 | 54 | 0.000000000000322325 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_6 | 20 | 52 | 9.90376e-43 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_207 | 6 | 10 | 0.00000000000064347 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_433 | 4 | 4 | 0.000000204717 |
| Magnolia biondii | Chr06 | 6 | CH_mbi_45 | 12 | 40 | 1.19801e-20 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_59 | 9 | 13 | 7.39352e-19 |
| Malus domestica | Chr14 | 6 | CH_mdo_425 | 5 | 11 | 0.000000050087 |
| Malus domestica | Chr07 | 6 | CH_mdo_68 | 8 | 12 | 6.78659e-17 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1017 | 5 | 40 | 0.0000954131 |
| Medicago truncatula | chr8 | 6 | CH_mtr_54 | 11 | 14 | 1.19526e-25 |
| Nelumbo nucifera | chr5 | 6 | CH_nnu_1 | 27 | 41 | 7.87234e-64 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_177 | 5 | 9 | 0.000000045244 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_65 | 9 | 15 | 1.43511e-19 |
| Quercus lobata | 8 | 6 | CH_qlo_233 | 8 | 9 | 2.94649e-17 |
| Quercus lobata | 8 | 6 | CH_qlo_267 | 9 | 20 | 8.81409e-16 |
| Quercus lobata | 10 | 6 | CH_qlo_714 | 7 | 38 | 0.0000000239239 |
| Simmondsia chinensis | GWHAASQ00000025 | 6 | CH_sci_122 | 5 | 9 | 0.000000104559 |
| Simmondsia chinensis | GWHAASQ00000023 | 6 | CH_sci_38 | 7 | 8 | 0.0000000000000239487 |
| Sechium edule | LG05 | 6 | CH_sed_261 | 3 | 3 | 0.0000117576 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_679 | 5 | 5 | 0.000000000273371 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_945 | 5 | 8 | 0.0000000152546 |
| Sapria himalayana | scaffold13_12996478 | 6 | CH_shi_205 | 4 | 67 | 0.0000021427 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_484 | 3 | 3 | 0.0000104593 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_362 | 4 | 5 | 0.00000020428 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_112 | 5 | 8 | 0.00000000036261 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_343 | 3 | 3 | 0.0000446817 |
| Vitis vinifera | chr15 | 6 | CH_vvi_288 | 4 | 4 | 0.000000162945 |
| Vitis vinifera | chr12 | 6 | CH_vvi_6 | 18 | 20 | 5.40906e-46 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |