Functional clusters
Information
- Type InterPro
- Description Coatomer beta subunit (COPB1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Contig01095_ERROPOS449607 | 5 | CH_ach_457 | 2 | 2 | 0.000325928 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_535 | 2 | 2 | 0.000198013 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1668 | 2 | 2 | 0.000320646 |
| Brassica napus | C01 | 5 | CH_bna_474 | 3 | 4 | 0.000000173638 |
| Brassica oleracea | C1 | 5 | CH_bol_256 | 3 | 4 | 0.000000128201 |
| Ceratophyllum demersum | 4 | 5 | CH_cde_20 | 5 | 15 | 0.00000000000525552 |
| Carica papaya | supercontig_23 | 5 | CH_cpa_335 | 2 | 2 | 0.0000950661 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_653 | 2 | 3 | 0.000573967 |
| Davidia involucrata | GWHABJS00000006 | 5 | CH_din_744 | 2 | 2 | 0.000500125 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_697 | 2 | 3 | 0.000964932 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_1075 | 2 | 2 | 0.000386429 |
| Prunus persica | Pp03 | 5 | CH_ppe_305 | 3 | 4 | 0.0000000333876 |
| Trochodendron aralioides | group3 | 5 | CH_tar_199 | 3 | 3 | 0.000000021627 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_608 | 2 | 2 | 0.000227092 |
| Vanilla planifolia | CM028160.1 | 5 | CH_vpl_322 | 3 | 28 | 0.0000268039 |
| Actinidia chinensis | Contig01095_ERROPOS449607 | 6 | CH_ach_457 | 2 | 2 | 0.000325928 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_535 | 2 | 2 | 0.000198013 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1668 | 2 | 2 | 0.000320646 |
| Brassica napus | C01 | 6 | CH_bna_474 | 3 | 4 | 0.000000173638 |
| Brassica oleracea | C1 | 6 | CH_bol_256 | 3 | 4 | 0.000000128201 |
| Ceratophyllum demersum | 4 | 6 | CH_cde_20 | 5 | 15 | 0.00000000000525552 |
| Carica papaya | supercontig_23 | 6 | CH_cpa_335 | 2 | 2 | 0.0000950661 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_653 | 2 | 3 | 0.000573967 |
| Davidia involucrata | GWHABJS00000006 | 6 | CH_din_744 | 2 | 2 | 0.000500125 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_697 | 2 | 3 | 0.000964932 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_1075 | 2 | 2 | 0.000386429 |
| Prunus persica | Pp03 | 6 | CH_ppe_305 | 3 | 4 | 0.0000000333876 |
| Trochodendron aralioides | group3 | 6 | CH_tar_199 | 3 | 3 | 0.000000021627 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_608 | 2 | 2 | 0.000227092 |
| Vanilla planifolia | CM028160.1 | 6 | CH_vpl_322 | 3 | 28 | 0.0000268039 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |