Functional clusters

Information

  • Type InterPro
  • Description Xyloglucan endotransglucosylase/hydrolase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_186 2 2 0.0000802568
Aethionema arabicum LG-2 5 CH_aar_129 4 4 0.0000000288218
Arabidopsis lyrata scaffold_8 5 CH_aly_410 3 3 0.0000466606
Arabidopsis lyrata scaffold_7 5 CH_aly_491 3 4 0.000186484
Arabidopsis thaliana Chr5 5 CH_ath_189 4 6 0.0000000380274
Arabidopsis thaliana Chr4 5 CH_ath_313 3 3 0.00000610666
Brassica carinata Contig1006 5 CH_bca_1248 3 3 0.0000521451
Brassica carinata ChrC03 5 CH_bca_1249 3 3 0.0000521451
Brassica carinata ChrC09 5 CH_bca_1250 3 3 0.0000521451
Brassica carinata ChrC06 5 CH_bca_1251 3 3 0.0000521451
Brassica carinata ChrC04 5 CH_bca_1847 3 5 0.000520813
Brassica carinata ChrB05 5 CH_bca_470 4 4 0.0000000418013
Brassica carinata ChrB08 5 CH_bca_471 4 4 0.0000000418013
Brassica napus A01 5 CH_bna_1030 3 3 0.0000738415
Brassica napus A03 5 CH_bna_1031 3 3 0.0000738415
Brassica napus C01 5 CH_bna_1032 3 3 0.0000738415
Brassica napus C02 5 CH_bna_420 4 4 0.000000063735
Brassica napus A10 5 CH_bna_582 4 6 0.000000954702
Brassica napus C07 5 CH_bna_657 4 7 0.00000222609
Brassica oleracea C2 5 CH_bol_197 4 4 0.0000000186872
Brassica oleracea C1 5 CH_bol_802 3 6 0.000518858
Brassica oleracea C9 5 CH_bol_882 3 7 0.000907497
Brassica rapa A10 5 CH_bra_177 4 5 0.000000273139
Brassica rapa A03 5 CH_bra_547 3 5 0.00054104
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_181 4 5 0.000000149291
Beta vulgaris Chr1_EL10_PGA_scaffold3 5 CH_bvu_213 4 6 0.000000447514
Camellia sinensis var. sinensis Chr7 5 CH_camsi_429 6 34 0.0000000270465
Cannabis sativa NC_044373.1 5 CH_cansat_543 4 31 0.000537553
Cicer arietinum L. Ca_LG7_v3 5 CH_car_46 4 4 0.00000000685344
Coffea canephora chr6 5 CH_ccan_47 5 23 0.00000000000330083
Ceratophyllum demersum 4 5 CH_cde_170 3 3 0.0000341906
Carpinus fangiana Cfa05 5 CH_cfa_172 4 4 0.00000000631463
Cardamine hirsuta Chr7 5 CH_chi_436 3 3 0.0000290968
Cardamine hirsuta Chr8 5 CH_chi_437 3 3 0.0000290968
Chenopodium quinoa C_Quinoa_Scaffold_4257 5 CH_cqu_151 6 10 0.0000000000228907
Chenopodium quinoa C_Quinoa_Scaffold_1516 5 CH_cqu_310 4 4 0.0000000864021
Chenopodium quinoa C_Quinoa_Scaffold_3784 5 CH_cqu_311 4 4 0.0000000864021
Chenopodium quinoa C_Quinoa_Scaffold_4087 5 CH_cqu_679 3 3 0.0000744257
Capsella rubella scaffold_8 5 CH_cru_216 4 4 0.0000000479879
Capsella rubella scaffold_7 5 CH_cru_217 4 4 0.0000000479879
Davidia involucrata GWHABJS00000017 5 CH_din_434 3 3 0.0000316516
Davidia involucrata GWHABJS00000013 5 CH_din_509 3 4 0.00012652
Durio zibethinus NW_019168159.1 5 CH_dzi_204 4 5 0.00000018419
Durio zibethinus NW_019167882.1 5 CH_dzi_230 4 6 0.000000552156
Durio zibethinus NW_019167893.1 5 CH_dzi_295 4 8 0.00000462774
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_237 4 5 0.0000000426246
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_458 3 3 0.0000135764
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_459 3 3 0.0000135764
Eucalyptus grandis Chr11 5 CH_egr_1018 3 3 0.0000366878
Eutrema salsugineum scaffold_1 5 CH_esa_175 4 5 0.000000135531
Fragaria vesca Fvb3 5 CH_fve_491 3 3 0.0000152269
Glycine max Gm17 5 CH_gma_93 6 6 0.0000000000000887513
Helianthus annuus HanXRQChr05 5 CH_han_491 4 5 0.00000031767
Lotus japonicus chr4 5 CH_lja_138 4 4 0.0000000300647
Lonicera japonica GWHAAZE00000007 5 CH_lonja_105 8 8 1.8771e-19
Lonicera japonica GWHAAZE00000004 5 CH_lonja_823 3 3 0.000076341
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_124 6 8 0.000000000000366505
Magnolia biondii Chr14 5 CH_mbi_665 3 3 0.0000159037
Malus domestica Chr17 5 CH_mdo_746 3 3 0.0000129079
Malus domestica Chr05 5 CH_mdo_856 3 4 0.0000516077
Manihot esculenta Chromosome14 5 CH_mes_28 12 12 8.14437e-32
Marchantia polymorpha scaffold_149 5 CH_mpo_165 3 3 0.00014217
Marchantia polymorpha scaffold_203 5 CH_mpo_26 7 11 0.000000000000483022
Marchantia polymorpha scaffold_71 5 CH_mpo_77 4 4 0.000000266956
Medicago truncatula chr4 5 CH_mtr_284 5 5 0.0000000000160183
Medicago truncatula chr7 5 CH_mtr_882 3 3 0.000026993
Oryza sativa ssp. japonica chr04 5 CH_osa_287 4 10 0.000000332627
Oryza sativa ssp. japonica chr08 5 CH_osa_390 4 18 0.00000805009
Petunia axillaris Peaxi162Scf00111 5 CH_pax_351 3 3 0.0000193054
Petunia axillaris Peaxi162Scf00610 5 CH_pax_89 5 6 0.0000000000724955
Punica granatum NC_045130.1 5 CH_pgr_257 4 6 0.000000520215
Punica granatum NC_045128.1 5 CH_pgr_96 6 9 0.00000000000266397
Prunus persica Pp03 5 CH_ppe_138 6 7 0.0000000000000837327
Prunus persica Pp01 5 CH_ppe_201 5 6 0.0000000000916161
Papaver somniferum NC_039363.1 5 CH_pso_244 5 6 0.0000000000403138
Papaver somniferum NW_020627707.1 5 CH_pso_774 3 3 0.0000199745
Papaver somniferum NC_039365.1 5 CH_pso_907 3 4 0.0000798619
Populus trichocarpa Chr18 5 CH_ptr_333 4 5 0.000000238063
Populus trichocarpa Chr06 5 CH_ptr_518 3 3 0.0000457994
Phaseolus vulgaris Chr03 5 CH_pvu_127 5 5 0.0000000000371434
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_205 6 8 0.0000000000000466719
Rhododendron simsii chr01 5 CH_rsi_586 3 3 0.0000182711
Sechium edule LG08 5 CH_sed_135 4 4 0.0000000391762
Sequoiadendron giganteum chr6 5 CH_sgi_1120 5 9 0.000000195356
Sequoiadendron giganteum chr4 5 CH_sgi_739 5 5 0.00000000156097
Sequoiadendron giganteum chr4 5 CH_sgi_873 6 14 0.00000000923577
Sapria himalayana scaffold5_19632047 5 CH_shi_164 3 4 0.000000196168
Solanum lycopersicum SL4.0ch07 5 CH_sly_539 3 3 0.0000338222
Solanum lycopersicum SL4.0ch12 5 CH_sly_540 3 3 0.0000338222
Schrenkiella parvula ch6-6 5 CH_spa_45 5 5 0.0000000000342345
Solanum pennellii Spenn-ch03 5 CH_spe_479 3 3 0.0000161915
Solanum pennellii Spenn-ch07 5 CH_spe_480 3 3 0.0000161915
Solanum tuberosum ST4.03ch07 5 CH_stu_501 3 3 0.0000115222
Tarenaya hassleriana NW_010971389.1 5 CH_tha_183 3 3 0.0000478974
Tarenaya hassleriana NW_010966021.1 5 CH_tha_310 3 5 0.000478138
Tarenaya hassleriana NW_010965372.1 5 CH_tha_98 4 4 0.0000000535316
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_38 6 6 0.00000000000000216838
Tripterygium wilfordii NC_052235.1 5 CH_twi_152 4 4 0.0000000343359
Tripterygium wilfordii NC_052254.1 5 CH_twi_182 4 5 0.000000171548
Tripterygium wilfordii NC_052248.1 5 CH_twi_327 3 3 0.0000362264
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_22 8 9 1.24774e-19
Zea mays 10 5 CH_zma_105 5 11 0.0000000012551
Zea mays 5 5 CH_zma_316 3 4 0.0000360636
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_186 2 2 0.0000802568
Aethionema arabicum LG-2 6 CH_aar_129 4 4 0.0000000288218
Arabidopsis lyrata scaffold_8 6 CH_aly_410 3 3 0.0000466606
Arabidopsis lyrata scaffold_7 6 CH_aly_491 3 4 0.000186484
Arabidopsis thaliana Chr5 6 CH_ath_189 4 6 0.0000000380274
Arabidopsis thaliana Chr4 6 CH_ath_313 3 3 0.00000610666
Brassica carinata Contig1006 6 CH_bca_1248 3 3 0.0000521451
Brassica carinata ChrC03 6 CH_bca_1249 3 3 0.0000521451
Brassica carinata ChrC09 6 CH_bca_1250 3 3 0.0000521451
Brassica carinata ChrC06 6 CH_bca_1251 3 3 0.0000521451
Brassica carinata ChrC04 6 CH_bca_1847 3 5 0.000520813
Brassica carinata ChrB05 6 CH_bca_470 4 4 0.0000000418013
Brassica carinata ChrB08 6 CH_bca_471 4 4 0.0000000418013
Brassica napus A01 6 CH_bna_1030 3 3 0.0000738415
Brassica napus A03 6 CH_bna_1031 3 3 0.0000738415
Brassica napus C01 6 CH_bna_1032 3 3 0.0000738415
Brassica napus C02 6 CH_bna_420 4 4 0.000000063735
Brassica napus A10 6 CH_bna_582 4 6 0.000000954702
Brassica napus C07 6 CH_bna_657 4 7 0.00000222609
Brassica oleracea C2 6 CH_bol_197 4 4 0.0000000186872
Brassica oleracea C1 6 CH_bol_802 3 6 0.000518858
Brassica oleracea C9 6 CH_bol_882 3 7 0.000907497
Brassica rapa A10 6 CH_bra_177 4 5 0.000000273139
Brassica rapa A03 6 CH_bra_547 3 5 0.00054104
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_181 4 5 0.000000149291
Beta vulgaris Chr1_EL10_PGA_scaffold3 6 CH_bvu_213 4 6 0.000000447514
Camellia sinensis var. sinensis Chr7 6 CH_camsi_429 6 34 0.0000000270465
Cannabis sativa NC_044373.1 6 CH_cansat_543 4 31 0.000537553
Cicer arietinum L. Ca_LG7_v3 6 CH_car_46 4 4 0.00000000685344
Coffea canephora chr6 6 CH_ccan_47 5 23 0.00000000000330083
Ceratophyllum demersum 4 6 CH_cde_170 3 3 0.0000341906
Carpinus fangiana Cfa05 6 CH_cfa_172 4 4 0.00000000631463
Cardamine hirsuta Chr7 6 CH_chi_436 3 3 0.0000290968
Cardamine hirsuta Chr8 6 CH_chi_437 3 3 0.0000290968
Chenopodium quinoa C_Quinoa_Scaffold_4257 6 CH_cqu_151 6 10 0.0000000000228907
Chenopodium quinoa C_Quinoa_Scaffold_1516 6 CH_cqu_310 4 4 0.0000000864021
Chenopodium quinoa C_Quinoa_Scaffold_3784 6 CH_cqu_311 4 4 0.0000000864021
Chenopodium quinoa C_Quinoa_Scaffold_4087 6 CH_cqu_679 3 3 0.0000744257
Capsella rubella scaffold_8 6 CH_cru_216 4 4 0.0000000479879
Capsella rubella scaffold_7 6 CH_cru_217 4 4 0.0000000479879
Davidia involucrata GWHABJS00000017 6 CH_din_434 3 3 0.0000316516
Davidia involucrata GWHABJS00000013 6 CH_din_509 3 4 0.00012652
Durio zibethinus NW_019168159.1 6 CH_dzi_204 4 5 0.00000018419
Durio zibethinus NW_019167882.1 6 CH_dzi_230 4 6 0.000000552156
Durio zibethinus NW_019167893.1 6 CH_dzi_295 4 8 0.00000462774
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_237 4 5 0.0000000426246
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_458 3 3 0.0000135764
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_459 3 3 0.0000135764
Eucalyptus grandis Chr11 6 CH_egr_1018 3 3 0.0000366878
Eutrema salsugineum scaffold_1 6 CH_esa_175 4 5 0.000000135531
Fragaria vesca Fvb3 6 CH_fve_491 3 3 0.0000152269
Glycine max Gm17 6 CH_gma_93 6 6 0.0000000000000887513
Helianthus annuus HanXRQChr05 6 CH_han_491 4 5 0.00000031767
Lotus japonicus chr4 6 CH_lja_138 4 4 0.0000000300647
Lonicera japonica GWHAAZE00000007 6 CH_lonja_105 8 8 1.8771e-19
Lonicera japonica GWHAAZE00000004 6 CH_lonja_823 3 3 0.000076341
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_124 6 8 0.000000000000366505
Magnolia biondii Chr14 6 CH_mbi_665 3 3 0.0000159037
Malus domestica Chr17 6 CH_mdo_746 3 3 0.0000129079
Malus domestica Chr05 6 CH_mdo_856 3 4 0.0000516077
Manihot esculenta Chromosome14 6 CH_mes_28 12 12 8.14437e-32
Marchantia polymorpha scaffold_149 6 CH_mpo_165 3 3 0.00014217
Marchantia polymorpha scaffold_203 6 CH_mpo_26 7 11 0.000000000000483022
Marchantia polymorpha scaffold_71 6 CH_mpo_77 4 4 0.000000266956
Medicago truncatula chr4 6 CH_mtr_284 5 5 0.0000000000160183
Medicago truncatula chr7 6 CH_mtr_882 3 3 0.000026993
Oryza sativa ssp. japonica chr04 6 CH_osa_287 4 10 0.000000332627
Oryza sativa ssp. japonica chr08 6 CH_osa_390 4 18 0.00000805009
Petunia axillaris Peaxi162Scf00111 6 CH_pax_351 3 3 0.0000193054
Petunia axillaris Peaxi162Scf00610 6 CH_pax_89 5 6 0.0000000000724955
Punica granatum NC_045130.1 6 CH_pgr_257 4 6 0.000000520215
Punica granatum NC_045128.1 6 CH_pgr_96 6 9 0.00000000000266397
Prunus persica Pp03 6 CH_ppe_138 6 7 0.0000000000000837327
Prunus persica Pp01 6 CH_ppe_201 5 6 0.0000000000916161
Papaver somniferum NC_039363.1 6 CH_pso_244 5 6 0.0000000000403138
Papaver somniferum NW_020627707.1 6 CH_pso_774 3 3 0.0000199745
Papaver somniferum NC_039365.1 6 CH_pso_907 3 4 0.0000798619
Populus trichocarpa Chr18 6 CH_ptr_333 4 5 0.000000238063
Populus trichocarpa Chr06 6 CH_ptr_518 3 3 0.0000457994
Phaseolus vulgaris Chr03 6 CH_pvu_127 5 5 0.0000000000371434
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_205 6 8 0.0000000000000466719
Rhododendron simsii chr01 6 CH_rsi_586 3 3 0.0000182711
Sechium edule LG08 6 CH_sed_135 4 4 0.0000000391762
Sequoiadendron giganteum chr6 6 CH_sgi_1120 5 9 0.000000195356
Sequoiadendron giganteum chr4 6 CH_sgi_739 5 5 0.00000000156097
Sequoiadendron giganteum chr4 6 CH_sgi_873 6 14 0.00000000923577
Sapria himalayana scaffold5_19632047 6 CH_shi_164 3 4 0.000000196168
Solanum lycopersicum SL4.0ch07 6 CH_sly_539 3 3 0.0000338222
Solanum lycopersicum SL4.0ch12 6 CH_sly_540 3 3 0.0000338222
Schrenkiella parvula ch6-6 6 CH_spa_45 5 5 0.0000000000342345
Solanum pennellii Spenn-ch03 6 CH_spe_479 3 3 0.0000161915
Solanum pennellii Spenn-ch07 6 CH_spe_480 3 3 0.0000161915
Solanum tuberosum ST4.03ch07 6 CH_stu_501 3 3 0.0000115222
Tarenaya hassleriana NW_010971389.1 6 CH_tha_183 3 3 0.0000478974
Tarenaya hassleriana NW_010966021.1 6 CH_tha_310 3 5 0.000478138
Tarenaya hassleriana NW_010965372.1 6 CH_tha_98 4 4 0.0000000535316
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_38 6 6 0.00000000000000216838
Tripterygium wilfordii NC_052235.1 6 CH_twi_152 4 4 0.0000000343359
Tripterygium wilfordii NC_052254.1 6 CH_twi_182 4 5 0.000000171548
Tripterygium wilfordii NC_052248.1 6 CH_twi_327 3 3 0.0000362264
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_22 8 9 1.24774e-19
Zea mays 10 6 CH_zma_105 5 11 0.0000000012551
Zea mays 5 6 CH_zma_316 3 4 0.0000360636

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001