Functional clusters
Information
- Type InterPro
- Description Glycoside hydrolase, family 19
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | A03 | 5 | CH_bna_92 | 6 | 7 | 0.00000000000000425749 |
| Brassica oleracea | C3 | 5 | CH_bol_86 | 5 | 7 | 0.00000000000365694 |
| Brassica rapa | A03 | 5 | CH_bra_51 | 5 | 6 | 0.00000000000311011 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_579 | 4 | 9 | 0.000000460128 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_269 | 3 | 4 | 0.00000136654 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_39 | 7 | 7 | 1.13014e-20 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_367 | 4 | 4 | 0.00000000336435 |
| Gossypium hirsutum | D09 | 5 | CH_ghi_404 | 4 | 5 | 0.0000000168158 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_435 | 4 | 6 | 0.0000000504293 |
| Malus domestica | Chr04 | 5 | CH_mdo_812 | 3 | 10 | 0.0000310359 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_412 | 3 | 4 | 0.00000639699 |
| Marchantia polymorpha | scaffold_116 | 5 | CH_mpo_112 | 3 | 4 | 0.0000120715 |
| Punica granatum | NC_045129.1 | 5 | CH_pgr_12 | 10 | 10 | 7.02304e-27 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_230 | 5 | 18 | 0.00000019829 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_119 | 7 | 18 | 0.00000000000000139615 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_2 | 16 | 27 | 1.89762e-45 |
| Quercus lobata | CM012294 | 5 | CH_qlo_153 | 9 | 13 | 1.08191e-20 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_122 | 6 | 6 | 3.11699e-16 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_499 | 3 | 5 | 0.0000147721 |
| Schrenkiella parvula | ch4-6 | 5 | CH_spa_41 | 5 | 9 | 0.0000000000167654 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_436 | 3 | 5 | 0.00000652656 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_231 | 4 | 6 | 0.00000000371121 |
| Tarenaya hassleriana | NW_010960188.1 | 5 | CH_tha_143 | 3 | 3 | 0.000002093 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_115 | 4 | 4 | 0.000000000303343 |
| Zea mays | 2 | 5 | CH_zma_221 | 3 | 3 | 0.0000014275 |
| Brassica napus | A03 | 6 | CH_bna_92 | 6 | 7 | 0.00000000000000425749 |
| Brassica oleracea | C3 | 6 | CH_bol_86 | 5 | 7 | 0.00000000000365694 |
| Brassica rapa | A03 | 6 | CH_bra_51 | 5 | 6 | 0.00000000000311011 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_579 | 4 | 9 | 0.000000460128 |
| Cucumis melo | chr08 | 6 | CH_cme_56 | 5 | 5 | 0.0000000000000187203 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_269 | 3 | 4 | 0.00000136654 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_522 | 3 | 3 | 0.00000307326 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_777 | 3 | 6 | 0.0000614239 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_39 | 7 | 7 | 1.13014e-20 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_367 | 4 | 4 | 0.00000000336435 |
| Gossypium hirsutum | D09 | 6 | CH_ghi_404 | 4 | 5 | 0.0000000168158 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_435 | 4 | 6 | 0.0000000504293 |
| Malus domestica | Chr04 | 6 | CH_mdo_812 | 3 | 10 | 0.0000310359 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_412 | 3 | 4 | 0.00000639699 |
| Marchantia polymorpha | scaffold_116 | 6 | CH_mpo_112 | 3 | 4 | 0.0000120715 |
| Punica granatum | NC_045129.1 | 6 | CH_pgr_12 | 10 | 10 | 7.02304e-27 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_230 | 5 | 18 | 0.00000019829 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_119 | 7 | 18 | 0.00000000000000139615 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_2 | 16 | 27 | 1.89762e-45 |
| Quercus lobata | CM012294 | 6 | CH_qlo_153 | 9 | 13 | 1.08191e-20 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_122 | 6 | 6 | 3.11699e-16 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_499 | 3 | 5 | 0.0000147721 |
| Schrenkiella parvula | ch4-6 | 6 | CH_spa_41 | 5 | 9 | 0.0000000000167654 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_436 | 3 | 5 | 0.00000652656 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_231 | 4 | 6 | 0.00000000371121 |
| Tarenaya hassleriana | NW_010960188.1 | 6 | CH_tha_143 | 3 | 3 | 0.000002093 |
| Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_115 | 4 | 4 | 0.000000000303343 |
| Zea mays | 2 | 6 | CH_zma_221 | 3 | 3 | 0.0000014275 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |