Functional clusters

Information

  • Type InterPro
  • Description FAD-binding, type PCMH, subdomain 2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 5 CH_aar_215 4 9 0.0000067858
Acer truncatum chr10 5 CH_acertr_5 16 33 6.47348e-34
Avicennia marina ScioBoG_102840_HRSCAF_103099 5 CH_ama_4 7 8 8.70943e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 5 CH_arhy_838 4 8 0.0000219947
Brassica oleracea C3 5 CH_bol_166 5 7 0.00000000489533
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_290 5 24 0.0000109562
Camellia sinensis var. sinensis Chr8 5 CH_camsi_12 14 17 1.24729e-34
Capsicum annuum PGAv.1.6.scaffold79 5 CH_can_66 10 13 8.96226e-20
Coffea canephora chr0 5 CH_ccan_229 3 3 0.00000136353
Citrus clementina scaffold_2 5 CH_ccl_6 23 27 1.67024e-52
Cardamine hirsuta Chr6 5 CH_chi_23 11 14 1.31636e-24
Chenopodium quinoa C_Quinoa_Scaffold_2715 5 CH_cqu_777 3 3 0.000154105
Daucus carota DCARv2_Chr1 5 CH_dca_717 3 3 0.000716811
Daucus carota DCARv2_Chr8 5 CH_dca_718 3 3 0.000716811
Durio zibethinus NW_019167982.1 5 CH_dzi_105 6 11 0.00000000028971
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_155 5 6 0.000000000912551
Gossypium hirsutum A12 5 CH_ghi_348 5 5 0.00000000164825
Lotus japonicus chr6 5 CH_lja_70 8 38 0.0000000000370479
Lonicera japonica GWHAAZE00000009 5 CH_lonja_461 5 7 0.000000204299
Magnolia biondii Chr01 5 CH_mbi_43 10 22 1.0057e-20
Magnolia biondii Chr04 5 CH_mbi_810 4 16 0.0000693737
Petunia axillaris Peaxi162Scf00154 5 CH_pax_371 3 3 0.0000368287
Prunus persica Pp04 5 CH_ppe_2 28 36 7.3406e-67
Papaver somniferum NC_039367.1 5 CH_pso_1115 3 4 0.0003697
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_11 21 75 1.08635e-44
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_927 3 3 0.0000294198
Rhododendron simsii chr02 5 CH_rsi_907 3 4 0.000404705
Salvia bowleyana GWHASIU00000004 5 CH_sbo_171 6 10 0.0000000000128407
Sequoiadendron giganteum chr1 5 CH_sgi_1264 6 28 0.000000847034
Sequoiadendron giganteum chr5 5 CH_sgi_156 12 22 5.29196e-23
Solanum lycopersicum SL4.0ch02 5 CH_sly_36 11 15 1.07495e-23
Solanum lycopersicum SL4.0ch10 5 CH_sly_55 9 10 3.46032e-20
Selaginella moellendorffii scaffold_51 5 CH_smo_191 5 22 0.0000459346
Theobroma cacao Chromosome_6 5 CH_tca_7 22 34 5.48384e-49
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_382 3 3 0.0000336774
Vitis vinifera chr3 5 CH_vvi_435 4 9 0.0000151181
Aethionema arabicum LG-6 6 CH_aar_215 4 9 0.0000067858
Acer truncatum chr10 6 CH_acertr_5 16 33 6.47348e-34
Avicennia marina ScioBoG_102840_HRSCAF_103099 6 CH_ama_4 7 8 8.70943e-16
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 6 CH_arhy_838 4 8 0.0000219947
Brassica oleracea C3 6 CH_bol_166 5 7 0.00000000489533
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_290 5 24 0.0000109562
Camellia sinensis var. sinensis Chr8 6 CH_camsi_12 14 17 1.24729e-34
Capsicum annuum PGAv.1.6.scaffold79 6 CH_can_66 10 13 8.96226e-20
Coffea canephora chr0 6 CH_ccan_229 3 3 0.00000136353
Citrus clementina scaffold_2 6 CH_ccl_6 23 27 1.67024e-52
Cardamine hirsuta Chr6 6 CH_chi_23 11 14 1.31636e-24
Chenopodium quinoa C_Quinoa_Scaffold_2715 6 CH_cqu_777 3 3 0.000154105
Daucus carota DCARv2_Chr1 6 CH_dca_717 3 3 0.000716811
Daucus carota DCARv2_Chr8 6 CH_dca_718 3 3 0.000716811
Durio zibethinus NW_019167982.1 6 CH_dzi_105 6 11 0.00000000028971
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_155 5 6 0.000000000912551
Fragaria x ananassa Fvb3-1 6 CH_fan_17 12 34 1.03869e-22
Gossypium hirsutum A12 6 CH_ghi_348 5 5 0.00000000164825
Lotus japonicus chr6 6 CH_lja_70 8 38 0.0000000000370479
Lonicera japonica GWHAAZE00000009 6 CH_lonja_461 5 7 0.000000204299
Magnolia biondii Chr01 6 CH_mbi_43 10 22 1.0057e-20
Magnolia biondii Chr04 6 CH_mbi_810 4 16 0.0000693737
Petunia axillaris Peaxi162Scf00154 6 CH_pax_371 3 3 0.0000368287
Prunus persica Pp04 6 CH_ppe_2 28 36 7.3406e-67
Papaver somniferum NC_039367.1 6 CH_pso_1115 3 4 0.0003697
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_11 21 75 1.08635e-44
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_927 3 3 0.0000294198
Rhododendron simsii chr02 6 CH_rsi_907 3 4 0.000404705
Salvia bowleyana GWHASIU00000004 6 CH_sbo_171 6 10 0.0000000000128407
Sequoiadendron giganteum chr1 6 CH_sgi_1264 6 28 0.000000847034
Sequoiadendron giganteum chr5 6 CH_sgi_156 12 22 5.29196e-23
Solanum lycopersicum SL4.0ch02 6 CH_sly_36 11 15 1.07495e-23
Solanum lycopersicum SL4.0ch10 6 CH_sly_55 9 10 3.46032e-20
Selaginella moellendorffii scaffold_51 6 CH_smo_191 5 22 0.0000459346
Theobroma cacao Chromosome_6 6 CH_tca_7 22 34 5.48384e-49
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_382 3 3 0.0000336774
Vitis vinifera chr3 6 CH_vvi_435 4 9 0.0000151181

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001