Functional clusters
Information
- Type InterPro
- Description SKP1 component, POZ domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_355 | 3 | 3 | 0.00000533263 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 5 | CH_amhyb_270 | 3 | 6 | 0.000118879 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_183 | 4 | 8 | 0.000000023907 |
| Brassica carinata | ChrC08 | 5 | CH_bca_1367 | 3 | 6 | 0.0000819691 |
| Brassica napus | A07 | 5 | CH_bna_1169 | 3 | 6 | 0.000202384 |
| Brassica napus | C07 | 5 | CH_bna_1170 | 3 | 6 | 0.000202384 |
| Brassica napus | C08 | 5 | CH_bna_247 | 5 | 10 | 0.000000000474525 |
| Brassica napus | A09 | 5 | CH_bna_803 | 3 | 3 | 0.0000101294 |
| Brassica rapa | A07 | 5 | CH_bra_337 | 3 | 5 | 0.0000425487 |
| Brassica rapa | A09 | 5 | CH_bra_96 | 4 | 4 | 0.00000000173655 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3541 | 5 | CH_cqu_62 | 7 | 8 | 3.83425e-17 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_10 | 11 | 13 | 1.02625e-28 |
| Davidia involucrata | GWHABJS00000004 | 5 | CH_din_195 | 4 | 4 | 0.00000000727113 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_780 | 3 | 13 | 0.000482573 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_290 | 4 | 5 | 0.0000000271445 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_423 | 5 | 37 | 0.0000000835199 |
| Medicago truncatula | chr7 | 5 | CH_mtr_134 | 9 | 26 | 7.29827e-17 |
| Nicotiana tabacum | Nitab4.5_0000096 | 5 | CH_nta_83 | 4 | 7 | 0.000000099066 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_174 | 4 | 4 | 0.00000000105181 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_540 | 3 | 7 | 0.0000994538 |
| Papaver somniferum | NW_020649859.1 | 5 | CH_pso_247 | 5 | 5 | 0.0000000000435505 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_5 | 15 | 19 | 1.44518e-38 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_584 | 3 | 4 | 0.0000169842 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_202 | 7 | 8 | 2.89038e-20 |
| Zea mays | 2 | 5 | CH_zma_49 | 5 | 5 | 0.000000000000223953 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_355 | 3 | 3 | 0.00000533263 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 6 | CH_amhyb_270 | 3 | 6 | 0.000118879 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_183 | 4 | 8 | 0.000000023907 |
| Brassica carinata | ChrC08 | 6 | CH_bca_1367 | 3 | 6 | 0.0000819691 |
| Brassica napus | A07 | 6 | CH_bna_1169 | 3 | 6 | 0.000202384 |
| Brassica napus | C07 | 6 | CH_bna_1170 | 3 | 6 | 0.000202384 |
| Brassica napus | C08 | 6 | CH_bna_247 | 5 | 10 | 0.000000000474525 |
| Brassica napus | A09 | 6 | CH_bna_803 | 3 | 3 | 0.0000101294 |
| Brassica rapa | A07 | 6 | CH_bra_337 | 3 | 5 | 0.0000425487 |
| Brassica rapa | A09 | 6 | CH_bra_96 | 4 | 4 | 0.00000000173655 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3541 | 6 | CH_cqu_62 | 7 | 8 | 3.83425e-17 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_10 | 11 | 13 | 1.02625e-28 |
| Davidia involucrata | GWHABJS00000004 | 6 | CH_din_195 | 4 | 4 | 0.00000000727113 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_780 | 3 | 13 | 0.000482573 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_449 | 4 | 8 | 0.00000108141 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_290 | 4 | 5 | 0.0000000271445 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_423 | 5 | 37 | 0.0000000835199 |
| Medicago truncatula | chr7 | 6 | CH_mtr_134 | 9 | 26 | 7.29827e-17 |
| Nicotiana tabacum | Nitab4.5_0000096 | 6 | CH_nta_83 | 4 | 7 | 0.000000099066 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_174 | 4 | 4 | 0.00000000105181 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_540 | 3 | 7 | 0.0000994538 |
| Papaver somniferum | NW_020649859.1 | 6 | CH_pso_247 | 5 | 5 | 0.0000000000435505 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_5 | 15 | 19 | 1.44518e-38 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_584 | 3 | 4 | 0.0000169842 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_202 | 7 | 8 | 2.89038e-20 |
| Zea mays | 2 | 6 | CH_zma_49 | 5 | 5 | 0.000000000000223953 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |