Functional clusters
Information
- Type InterPro
- Description SKP1 component, dimerisation
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_362 | 3 | 3 | 0.00000745 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 5 | CH_amhyb_198 | 3 | 5 | 0.0000483195 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 5 | CH_amhyb_88 | 4 | 6 | 0.0000000366094 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_388 | 3 | 7 | 0.0000417244 |
| Brassica carinata | ChrC07 | 5 | CH_bca_965 | 3 | 3 | 0.00000532583 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_292 | 3 | 3 | 0.00000189286 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_187 | 4 | 5 | 0.00000000495741 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 5 | CH_cqu_92 | 6 | 6 | 0.00000000000000595291 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 5 | CH_cqu_94 | 8 | 28 | 0.00000000000000721212 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1245 | 3 | 13 | 0.000322572 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_189 | 4 | 4 | 0.000000000828192 |
| Eutrema salsugineum | scaffold_7 | 5 | CH_esa_16 | 8 | 9 | 5.42037e-22 |
| Magnolia biondii | Chr13 | 5 | CH_mbi_642 | 3 | 4 | 0.0000101147 |
| Medicago truncatula | chr8 | 5 | CH_mtr_717 | 4 | 7 | 0.00000181569 |
| Medicago truncatula | chr4 | 5 | CH_mtr_76 | 9 | 10 | 3.50113e-22 |
| Olea europaea | chr19 | 5 | CH_oeu_218 | 3 | 4 | 0.00000376041 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_361 | 3 | 5 | 0.0000116683 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_362 | 3 | 5 | 0.0000116683 |
| Papaver somniferum | NW_020618823.1 | 5 | CH_pso_350 | 5 | 11 | 0.00000000486034 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_351 | 5 | 11 | 0.00000000486034 |
| Papaver somniferum | NW_020650859.1 | 5 | CH_pso_459 | 4 | 5 | 0.0000000836034 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_931 | 3 | 4 | 0.000104165 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_954 | 3 | 6 | 0.0000388768 |
| Rhododendron simsii | chr05 | 5 | CH_rsi_738 | 3 | 7 | 0.000148447 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_439 | 4 | 20 | 0.00000399364 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_372 | 3 | 3 | 0.00000166188 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_64 | 7 | 7 | 6.09503e-18 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_645 | 3 | 4 | 0.0000859177 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_68 | 6 | 13 | 0.00000000000370813 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_274 | 3 | 3 | 0.00000108804 |
| Vitis vinifera | chr3 | 5 | CH_vvi_305 | 3 | 3 | 0.000000303754 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_362 | 3 | 3 | 0.00000745 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 6 | CH_amhyb_198 | 3 | 5 | 0.0000483195 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 6 | CH_amhyb_88 | 4 | 6 | 0.0000000366094 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_388 | 3 | 7 | 0.0000417244 |
| Brassica carinata | ChrC07 | 6 | CH_bca_965 | 3 | 3 | 0.00000532583 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_292 | 3 | 3 | 0.00000189286 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_187 | 4 | 5 | 0.00000000495741 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2048 | 6 | CH_cqu_92 | 6 | 6 | 0.00000000000000595291 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1412 | 6 | CH_cqu_94 | 8 | 28 | 0.00000000000000721212 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1245 | 3 | 13 | 0.000322572 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_189 | 4 | 4 | 0.000000000828192 |
| Eutrema salsugineum | scaffold_7 | 6 | CH_esa_16 | 8 | 9 | 5.42037e-22 |
| Magnolia biondii | Chr13 | 6 | CH_mbi_642 | 3 | 4 | 0.0000101147 |
| Medicago truncatula | chr8 | 6 | CH_mtr_717 | 4 | 7 | 0.00000181569 |
| Medicago truncatula | chr4 | 6 | CH_mtr_76 | 9 | 10 | 3.50113e-22 |
| Olea europaea | chr19 | 6 | CH_oeu_218 | 3 | 4 | 0.00000376041 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_361 | 3 | 5 | 0.0000116683 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_362 | 3 | 5 | 0.0000116683 |
| Papaver somniferum | NW_020618823.1 | 6 | CH_pso_350 | 5 | 11 | 0.00000000486034 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_351 | 5 | 11 | 0.00000000486034 |
| Papaver somniferum | NW_020650859.1 | 6 | CH_pso_459 | 4 | 5 | 0.0000000836034 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_931 | 3 | 4 | 0.000104165 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_954 | 3 | 6 | 0.0000388768 |
| Rhododendron simsii | chr05 | 6 | CH_rsi_738 | 3 | 7 | 0.000148447 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_439 | 4 | 20 | 0.00000399364 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_372 | 3 | 3 | 0.00000166188 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_64 | 7 | 7 | 6.09503e-18 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_645 | 3 | 4 | 0.0000859177 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_68 | 6 | 13 | 0.00000000000370813 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_274 | 3 | 3 | 0.00000108804 |
| Vitis vinifera | chr3 | 6 | CH_vvi_305 | 3 | 3 | 0.000000303754 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |