Functional clusters
Information
- Type InterPro
- Description Staphylococcal nuclease (SNase-like), OB-fold
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_762 | 2 | 2 | 0.000211491 |
| Brassica oleracea | C2 | 5 | CH_bol_272 | 3 | 4 | 0.00000022435 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_877 | 3 | 15 | 0.0000286763 |
| Capsicum annuum | PGAv.1.6.scaffold256 | 5 | CH_can_700 | 2 | 2 | 0.000247831 |
| Corylus avellana | 11 | 5 | CH_cav_297 | 3 | 7 | 0.00000123414 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_81 | 3 | 3 | 0.0000000935703 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_498 | 2 | 2 | 0.000227204 |
| Corchorus olitorius | AWUE01019136.1 | 5 | CH_col_222 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019167926.1 | 5 | CH_dzi_488 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_116 | 4 | 4 | 0.0000000000569249 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_431 | 4 | 5 | 0.0000000000150368 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_47 | 10 | 14 | 9.04336e-30 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_167 | 4 | 5 | 0.000000000291201 |
| Medicago truncatula | chr5 | 5 | CH_mtr_1076 | 2 | 2 | 0.000123259 |
| Olea europaea | chr19 | 5 | CH_oeu_538 | 2 | 2 | 0.000320273 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_243 | 3 | 5 | 0.000000337789 |
| Prunus persica | Pp02 | 5 | CH_ppe_349 | 3 | 4 | 0.000000166944 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_52 | 8 | 22 | 1.29681e-20 |
| Quercus lobata | 8 | 5 | CH_qlo_157 | 7 | 10 | 2.14791e-20 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1097 | 3 | 5 | 0.000000142381 |
| Trochodendron aralioides | group18 | 5 | CH_tar_670 | 2 | 2 | 0.00018011 |
| Acer truncatum | chr12 | 6 | CH_acertr_762 | 2 | 2 | 0.000211491 |
| Brassica oleracea | C2 | 6 | CH_bol_272 | 3 | 4 | 0.00000022435 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_877 | 3 | 15 | 0.0000286763 |
| Capsicum annuum | PGAv.1.6.scaffold256 | 6 | CH_can_700 | 2 | 2 | 0.000247831 |
| Corylus avellana | 11 | 6 | CH_cav_297 | 3 | 7 | 0.00000123414 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_81 | 3 | 3 | 0.0000000935703 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_498 | 2 | 2 | 0.000227204 |
| Corchorus olitorius | AWUE01019136.1 | 6 | CH_col_222 | 2 | 2 | 0.000876296 |
| Durio zibethinus | NW_019167926.1 | 6 | CH_dzi_488 | 2 | 2 | 0.000278093 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_116 | 4 | 4 | 0.0000000000569249 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_431 | 4 | 5 | 0.0000000000150368 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_47 | 10 | 14 | 9.04336e-30 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_167 | 4 | 5 | 0.000000000291201 |
| Medicago truncatula | chr5 | 6 | CH_mtr_1076 | 2 | 2 | 0.000123259 |
| Olea europaea | chr19 | 6 | CH_oeu_538 | 2 | 2 | 0.000320273 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_243 | 3 | 5 | 0.000000337789 |
| Prunus persica | Pp02 | 6 | CH_ppe_349 | 3 | 4 | 0.000000166944 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_52 | 8 | 22 | 1.29681e-20 |
| Quercus lobata | 8 | 6 | CH_qlo_157 | 7 | 10 | 2.14791e-20 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1097 | 3 | 5 | 0.000000142381 |
| Trochodendron aralioides | group18 | 6 | CH_tar_670 | 2 | 2 | 0.00018011 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |