Functional clusters
Information
- Type InterPro
- Description Kelch-type beta propeller
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_229 | 7 | 42 | 0.000105279 |
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_244 | 6 | 26 | 0.000174697 |
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_310 | 4 | 6 | 0.000396057 |
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_311 | 4 | 6 | 0.000396057 |
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_371 | 4 | 7 | 0.000919943 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 5 | CH_amhyb_99 | 8 | 58 | 0.0000000630843 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_878 | 4 | 7 | 0.0000442346 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_83 | 6 | 6 | 0.00000000000572101 |
| Brassica carinata | ChrB01 | 5 | CH_bca_113 | 9 | 13 | 0.000000000000144461 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1270 | 4 | 4 | 0.0000629472 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1271 | 4 | 4 | 0.0000629472 |
| Brassica carinata | ChrC01 | 5 | CH_bca_399 | 6 | 7 | 0.0000000112375 |
| Brassica carinata | ChrC01 | 5 | CH_bca_472 | 6 | 8 | 0.0000000447552 |
| Brassica carinata | ChrC02 | 5 | CH_bca_473 | 6 | 8 | 0.0000000447552 |
| Brassica carinata | ChrB05 | 5 | CH_bca_556 | 6 | 9 | 0.000000133684 |
| Brassica carinata | ChrB01 | 5 | CH_bca_735 | 7 | 21 | 0.00000088907 |
| Brassica carinata | Contig372 | 5 | CH_bca_833 | 5 | 6 | 0.0000019054 |
| Brassica napus | A04 | 5 | CH_bna_1388 | 4 | 5 | 0.000556356 |
| Brassica napus | A09 | 5 | CH_bna_176 | 7 | 7 | 0.0000000000200851 |
| Brassica napus | A06 | 5 | CH_bna_261 | 7 | 9 | 0.00000000071595 |
| Brassica napus | C04 | 5 | CH_bna_36 | 14 | 27 | 6.47604e-20 |
| Brassica napus | C03 | 5 | CH_bna_392 | 7 | 13 | 0.000000033459 |
| Brassica napus | C04 | 5 | CH_bna_41 | 12 | 17 | 6.70606e-19 |
| Brassica napus | C04 | 5 | CH_bna_562 | 6 | 10 | 0.000000734299 |
| Brassica napus | C03 | 5 | CH_bna_825 | 5 | 7 | 0.0000131428 |
| Brassica oleracea | C4 | 5 | CH_bol_168 | 6 | 7 | 0.00000000519598 |
| Brassica oleracea | C3 | 5 | CH_bol_766 | 4 | 6 | 0.000488772 |
| Brassica rapa | A04 | 5 | CH_bra_290 | 7 | 28 | 0.0000109039 |
| Brassica rapa | A06 | 5 | CH_bra_4 | 14 | 17 | 1.25364e-24 |
| Brassica rapa | A09 | 5 | CH_bra_98 | 6 | 6 | 0.00000000178553 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_790 | 4 | 5 | 0.000008645 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_873 | 6 | 38 | 0.0000266762 |
| Capsicum annuum | PGAv.1.6.scaffold58 | 5 | CH_can_345 | 5 | 10 | 0.000000612582 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_315 | 4 | 11 | 0.000257057 |
| Corylus avellana | 1 | 5 | CH_cav_230 | 6 | 15 | 0.000000127464 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_350 | 4 | 5 | 0.000011946 |
| Cardamine hirsuta | NSCAFA.230 | 5 | CH_chi_109 | 10 | 26 | 0.00000000000235764 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_444 | 8 | 60 | 0.0000365166 |
| Corchorus olitorius | AWUE01020863.1 | 5 | CH_col_120 | 4 | 10 | 0.000195625 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_283 | 8 | 31 | 0.000000622324 |
| Davidia involucrata | GWHABJS00000012 | 5 | CH_din_126 | 7 | 11 | 0.000000000012828 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_188 | 5 | 5 | 0.00000000574371 |
| Davidia involucrata | GWHABJS00000015 | 5 | CH_din_370 | 6 | 28 | 0.000005407 |
| Eucalyptus grandis | Chr02 | 5 | CH_egr_521 | 5 | 5 | 0.000000000618671 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_239 | 5 | 6 | 0.0000034443 |
| Eutrema salsugineum | scaffold_10 | 5 | CH_esa_53 | 13 | 36 | 0.00000000000000776196 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_247 | 9 | 47 | 0.00000000824695 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_678 | 6 | 37 | 0.000263239 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_128 | 14 | 55 | 1.57803e-17 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_237 | 7 | 8 | 0.00000000000360506 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_285 | 11 | 70 | 0.000000000154881 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_856 | 7 | 60 | 0.000146327 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_984 | 6 | 37 | 0.000249541 |
| Nicotiana tabacum | Nitab4.5_0001488 | 5 | CH_nta_94 | 4 | 4 | 0.000000261804 |
| Prunus persica | Pp05 | 5 | CH_ppe_266 | 5 | 5 | 0.00000000429148 |
| Simmondsia chinensis | GWHAASQ00000022 | 5 | CH_sci_421 | 3 | 3 | 0.000335539 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1114 | 5 | 6 | 0.000000176514 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_222 | 11 | 16 | 2.72893e-19 |
| Sapria himalayana | scaffold19_10581841 | 5 | CH_shi_368 | 3 | 6 | 0.000150862 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_229 | 7 | 42 | 0.000105279 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_244 | 6 | 26 | 0.000174697 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_310 | 4 | 6 | 0.000396057 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_311 | 4 | 6 | 0.000396057 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_371 | 4 | 7 | 0.000919943 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_4 | 6 | CH_amhyb_99 | 8 | 58 | 0.0000000630843 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_878 | 4 | 7 | 0.0000442346 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_83 | 6 | 6 | 0.00000000000572101 |
| Brassica carinata | ChrB01 | 6 | CH_bca_113 | 9 | 13 | 0.000000000000144461 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1270 | 4 | 4 | 0.0000629472 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1271 | 4 | 4 | 0.0000629472 |
| Brassica carinata | ChrC01 | 6 | CH_bca_399 | 6 | 7 | 0.0000000112375 |
| Brassica carinata | ChrC01 | 6 | CH_bca_472 | 6 | 8 | 0.0000000447552 |
| Brassica carinata | ChrC02 | 6 | CH_bca_473 | 6 | 8 | 0.0000000447552 |
| Brassica carinata | ChrB05 | 6 | CH_bca_556 | 6 | 9 | 0.000000133684 |
| Brassica carinata | ChrB01 | 6 | CH_bca_735 | 7 | 21 | 0.00000088907 |
| Brassica carinata | Contig372 | 6 | CH_bca_833 | 5 | 6 | 0.0000019054 |
| Brassica napus | A04 | 6 | CH_bna_1388 | 4 | 5 | 0.000556356 |
| Brassica napus | A09 | 6 | CH_bna_176 | 7 | 7 | 0.0000000000200851 |
| Brassica napus | A06 | 6 | CH_bna_261 | 7 | 9 | 0.00000000071595 |
| Brassica napus | C04 | 6 | CH_bna_36 | 14 | 27 | 6.47604e-20 |
| Brassica napus | C03 | 6 | CH_bna_392 | 7 | 13 | 0.000000033459 |
| Brassica napus | C04 | 6 | CH_bna_41 | 12 | 17 | 6.70606e-19 |
| Brassica napus | C04 | 6 | CH_bna_562 | 6 | 10 | 0.000000734299 |
| Brassica napus | C03 | 6 | CH_bna_825 | 5 | 7 | 0.0000131428 |
| Brassica oleracea | C4 | 6 | CH_bol_168 | 6 | 7 | 0.00000000519598 |
| Brassica oleracea | C3 | 6 | CH_bol_766 | 4 | 6 | 0.000488772 |
| Brassica rapa | A04 | 6 | CH_bra_290 | 7 | 28 | 0.0000109039 |
| Brassica rapa | A06 | 6 | CH_bra_4 | 14 | 17 | 1.25364e-24 |
| Brassica rapa | A09 | 6 | CH_bra_98 | 6 | 6 | 0.00000000178553 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_790 | 4 | 5 | 0.000008645 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_873 | 6 | 38 | 0.0000266762 |
| Capsicum annuum | PGAv.1.6.scaffold58 | 6 | CH_can_345 | 5 | 10 | 0.000000612582 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_315 | 4 | 11 | 0.000257057 |
| Corylus avellana | 1 | 6 | CH_cav_230 | 6 | 15 | 0.000000127464 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_350 | 4 | 5 | 0.000011946 |
| Cardamine hirsuta | NSCAFA.230 | 6 | CH_chi_109 | 10 | 26 | 0.00000000000235764 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_444 | 8 | 60 | 0.0000365166 |
| Corchorus olitorius | AWUE01020863.1 | 6 | CH_col_120 | 4 | 10 | 0.000195625 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_283 | 8 | 31 | 0.000000622324 |
| Davidia involucrata | GWHABJS00000012 | 6 | CH_din_126 | 7 | 11 | 0.000000000012828 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_188 | 5 | 5 | 0.00000000574371 |
| Davidia involucrata | GWHABJS00000015 | 6 | CH_din_370 | 6 | 28 | 0.000005407 |
| Eucalyptus grandis | Chr02 | 6 | CH_egr_521 | 5 | 5 | 0.000000000618671 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_239 | 5 | 6 | 0.0000034443 |
| Eutrema salsugineum | scaffold_10 | 6 | CH_esa_53 | 13 | 36 | 0.00000000000000776196 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_247 | 9 | 47 | 0.00000000824695 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_678 | 6 | 37 | 0.000263239 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_128 | 14 | 55 | 1.57803e-17 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_237 | 7 | 8 | 0.00000000000360506 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_285 | 11 | 70 | 0.000000000154881 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_856 | 7 | 60 | 0.000146327 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_984 | 6 | 37 | 0.000249541 |
| Nicotiana tabacum | Nitab4.5_0001488 | 6 | CH_nta_94 | 4 | 4 | 0.000000261804 |
| Prunus persica | Pp05 | 6 | CH_ppe_266 | 5 | 5 | 0.00000000429148 |
| Simmondsia chinensis | GWHAASQ00000022 | 6 | CH_sci_421 | 3 | 3 | 0.000335539 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1114 | 5 | 6 | 0.000000176514 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_222 | 11 | 16 | 2.72893e-19 |
| Sapria himalayana | scaffold19_10581841 | 6 | CH_shi_368 | 3 | 6 | 0.000150862 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |