Functional clusters
Information
- Type InterPro
- Description Alginate lyase 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group26 | 5 | CH_ach_456 | 2 | 2 | 0.000325928 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 5 | CH_atr_395 | 2 | 2 | 0.0000794407 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_526 | 3 | 8 | 0.000000176607 |
| Corylus avellana | 7 | 5 | CH_cav_695 | 2 | 4 | 0.000459982 |
| Coffea canephora | chr7 | 5 | CH_ccan_48 | 5 | 55 | 0.00000000000353816 |
| Coffea canephora | chr10 | 5 | CH_ccan_90 | 4 | 21 | 0.000000000457702 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_307 | 4 | 22 | 0.000000181377 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_208 | 3 | 3 | 0.0000000344157 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_221 | 3 | 3 | 0.000000213555 |
| Daucus carota | DCARv2_Chr4 | 5 | CH_dca_222 | 3 | 3 | 0.000000213555 |
| Davidia involucrata | GWHABJS00000021 | 5 | CH_din_815 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019168470.1 | 5 | CH_dzi_487 | 2 | 2 | 0.000278093 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_92 | 8 | 9 | 6.00559e-26 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_208 | 4 | 9 | 0.00000000115885 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_1121 | 2 | 2 | 0.000400523 |
| Glycine max | Gm06 | 5 | CH_gma_644 | 2 | 2 | 0.000113867 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_513 | 2 | 2 | 0.000160832 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_432 | 3 | 3 | 0.0000000783982 |
| Lotus japonicus | chr2 | 5 | CH_lja_532 | 2 | 2 | 0.000429046 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_753 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_185 | 4 | 5 | 0.0000000000712953 |
| Magnolia biondii | Chr09 | 5 | CH_mbi_91 | 7 | 33 | 5.28726e-16 |
| Malus domestica | Chr10 | 5 | CH_mdo_253 | 5 | 35 | 0.000000000281428 |
| Petunia axillaris | Peaxi162Scf00599 | 5 | CH_pax_428 | 2 | 2 | 0.0000703556 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_224 | 3 | 3 | 0.000000168917 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_225 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp08 | 5 | CH_ppe_204 | 4 | 6 | 0.000000000093395 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_625 | 2 | 2 | 0.000312981 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_317 | 3 | 3 | 0.000000100229 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_532 | 3 | 3 | 0.0000000476781 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_769 | 3 | 8 | 0.00000266911 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_40 | 11 | 11 | 2.29121e-37 |
| Trochodendron aralioides | group11 | 5 | CH_tar_514 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_306 | 3 | 4 | 0.00000012873 |
| Tripterygium wilfordii | NC_052246.1 | 5 | CH_twi_348 | 2 | 2 | 0.0000557507 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_344 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_116 | 3 | 3 | 0.0000000327578 |
| Vitis vinifera | chr7 | 5 | CH_vvi_692 | 2 | 2 | 0.000456378 |
| Actinidia chinensis | Lachesis_group26 | 6 | CH_ach_456 | 2 | 2 | 0.000325928 |
| Amborella trichopoda | AmTr_v1.0_scaffold00040 | 6 | CH_atr_395 | 2 | 2 | 0.0000794407 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_526 | 3 | 8 | 0.000000176607 |
| Corylus avellana | 7 | 6 | CH_cav_695 | 2 | 4 | 0.000459982 |
| Coffea canephora | chr7 | 6 | CH_ccan_48 | 5 | 55 | 0.00000000000353816 |
| Coffea canephora | chr10 | 6 | CH_ccan_90 | 4 | 21 | 0.000000000457702 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_307 | 4 | 22 | 0.000000181377 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_208 | 3 | 3 | 0.0000000344157 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_221 | 3 | 3 | 0.000000213555 |
| Daucus carota | DCARv2_Chr4 | 6 | CH_dca_222 | 3 | 3 | 0.000000213555 |
| Davidia involucrata | GWHABJS00000021 | 6 | CH_din_815 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019168470.1 | 6 | CH_dzi_487 | 2 | 2 | 0.000278093 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_92 | 8 | 9 | 6.00559e-26 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_563 | 3 | 8 | 0.00000474395 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_208 | 4 | 9 | 0.00000000115885 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_1121 | 2 | 2 | 0.000400523 |
| Glycine max | Gm06 | 6 | CH_gma_644 | 2 | 2 | 0.000113867 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_513 | 2 | 2 | 0.000160832 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_432 | 3 | 3 | 0.0000000783982 |
| Lotus japonicus | chr2 | 6 | CH_lja_532 | 2 | 2 | 0.000429046 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_753 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_185 | 4 | 5 | 0.0000000000712953 |
| Magnolia biondii | Chr09 | 6 | CH_mbi_91 | 7 | 33 | 5.28726e-16 |
| Malus domestica | Chr10 | 6 | CH_mdo_253 | 5 | 35 | 0.000000000281428 |
| Petunia axillaris | Peaxi162Scf00599 | 6 | CH_pax_428 | 2 | 2 | 0.0000703556 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_224 | 3 | 3 | 0.000000168917 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_225 | 3 | 3 | 0.000000168917 |
| Prunus persica | Pp08 | 6 | CH_ppe_204 | 4 | 6 | 0.000000000093395 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_625 | 2 | 2 | 0.000312981 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_317 | 3 | 3 | 0.000000100229 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_532 | 3 | 3 | 0.0000000476781 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_769 | 3 | 8 | 0.00000266911 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_40 | 11 | 11 | 2.29121e-37 |
| Trochodendron aralioides | group11 | 6 | CH_tar_514 | 2 | 2 | 0.0000600366 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_306 | 3 | 4 | 0.00000012873 |
| Tripterygium wilfordii | NC_052246.1 | 6 | CH_twi_348 | 2 | 2 | 0.0000557507 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_344 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_116 | 3 | 3 | 0.0000000327578 |
| Vitis vinifera | chr7 | 6 | CH_vvi_692 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |