Functional clusters

Information

  • Type InterPro
  • Description Sterol desaturase Scs7

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr10 5 CH_acertr_714 2 3 0.000211484
Avicennia marina ScioBoG_19538_HRSCAF_19626 5 CH_ama_169 2 2 0.000258665
Brassica carinata ChrC02 5 CH_bca_610 3 3 0.000000249498
Camellia sinensis var. sinensis Chr8 5 CH_camsi_1080 2 2 0.000137564
Cannabis sativa NC_044378.1 5 CH_cansat_507 2 4 0.000393959
Citrus clementina scaffold_2 5 CH_ccl_533 2 2 0.0000820311
Citrullus lanatus CG_Chr01 5 CH_cla_219 2 2 0.0000887115
Cucumis sativus L. chr6 5 CH_csa_344 2 2 0.0000834759
Erythranthe guttata scaffold_13 5 CH_egut_597 2 2 0.000218444
Fragaria vesca Fvb3 5 CH_fve_149 4 8 0.0000000000429316
Lupinus albus Lalb_Chr13 5 CH_lal_695 2 2 0.000524824
Lonicera japonica GWHAAZE00000002 5 CH_lonja_344 4 15 0.00000000439554
Malus domestica Chr05 5 CH_mdo_1100 2 2 0.000227527
Malus domestica Chr10 5 CH_mdo_1366 2 3 0.000682551
Medicago truncatula chr4 5 CH_mtr_1074 2 2 0.000123259
Nicotiana tabacum Nitab4.5_0000076 5 CH_nta_324 2 2 0.000658364
Petunia axillaris Peaxi162Scf00395 5 CH_pax_132 3 3 0.00000000742514
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_280 4 7 0.00000000000665232
Rhododendron simsii chr02 5 CH_rsi_800 2 2 0.000193592
Salvia bowleyana GWHASIU00000004 5 CH_sbo_576 2 2 0.000136494
Sechium edule LG10 5 CH_sed_402 2 2 0.000214026
Solanum lycopersicum SL4.0ch02 5 CH_sly_855 2 3 0.000528221
Solanum pennellii Spenn-ch02 5 CH_spe_648 2 2 0.000133437
Solanum tuberosum ST4.03ch02 5 CH_stu_715 2 2 0.000153736
Tripterygium wilfordii NC_052247.1 5 CH_twi_347 2 2 0.0000557507
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_456 2 2 0.0000929238
Vitis vinifera chr10 5 CH_vvi_516 2 2 0.000076063
Acer truncatum chr10 6 CH_acertr_714 2 3 0.000211484
Avicennia marina ScioBoG_19538_HRSCAF_19626 6 CH_ama_169 2 2 0.000258665
Brassica carinata ChrC02 6 CH_bca_610 3 3 0.000000249498
Camellia sinensis var. sinensis Chr8 6 CH_camsi_1080 2 2 0.000137564
Cannabis sativa NC_044378.1 6 CH_cansat_507 2 4 0.000393959
Citrus clementina scaffold_2 6 CH_ccl_533 2 2 0.0000820311
Citrullus lanatus CG_Chr01 6 CH_cla_219 2 2 0.0000887115
Cucumis melo chr08 6 CH_cme_308 2 2 0.0000667111
Cucumis sativus L. chr6 6 CH_csa_344 2 2 0.0000834759
Erythranthe guttata scaffold_13 6 CH_egut_597 2 2 0.000218444
Fragaria x ananassa Fvb3-4 6 CH_fan_199 4 8 0.000000000658396
Fragaria x ananassa Fvb3-3 6 CH_fan_335 3 3 0.000000112988
Fragaria x ananassa Fvb3-2 6 CH_fan_336 3 3 0.000000112988
Fragaria vesca Fvb3 6 CH_fve_149 4 8 0.0000000000429316
Lupinus albus Lalb_Chr13 6 CH_lal_695 2 2 0.000524824
Lonicera japonica GWHAAZE00000002 6 CH_lonja_344 4 15 0.00000000439554
Malus domestica Chr05 6 CH_mdo_1100 2 2 0.000227527
Malus domestica Chr10 6 CH_mdo_1366 2 3 0.000682551
Medicago truncatula chr4 6 CH_mtr_1074 2 2 0.000123259
Nicotiana tabacum Nitab4.5_0000076 6 CH_nta_324 2 2 0.000658364
Petunia axillaris Peaxi162Scf00395 6 CH_pax_132 3 3 0.00000000742514
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_280 4 7 0.00000000000665232
Rhododendron simsii chr02 6 CH_rsi_800 2 2 0.000193592
Salvia bowleyana GWHASIU00000004 6 CH_sbo_576 2 2 0.000136494
Sechium edule LG10 6 CH_sed_402 2 2 0.000214026
Solanum lycopersicum SL4.0ch02 6 CH_sly_855 2 3 0.000528221
Solanum pennellii Spenn-ch02 6 CH_spe_648 2 2 0.000133437
Solanum tuberosum ST4.03ch02 6 CH_stu_715 2 2 0.000153736
Tripterygium wilfordii NC_052247.1 6 CH_twi_347 2 2 0.0000557507
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_456 2 2 0.0000929238
Vitis vinifera chr10 6 CH_vvi_516 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001