Functional clusters

Information

  • Type InterPro
  • Description PAS fold

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 5 CH_aly_291 3 3 0.00000107829
Arabidopsis thaliana Chr3 5 CH_ath_259 3 4 0.000000590914
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_520 2 2 0.000827917
Camellia sinensis var. sinensis Chr5 5 CH_camsi_641 3 4 0.00000105963
Cannabis sativa NC_044376.1 5 CH_cansat_572 2 2 0.000656642
Carpinus fangiana Cfa06 5 CH_cfa_597 2 2 0.000757346
Corchorus olitorius AWUE01022414.1 5 CH_col_125 2 2 0.000292099
Lotus japonicus chr6 5 CH_lja_583 2 2 0.000715077
Nelumbo nucifera chr4 5 CH_nnu_586 2 2 0.000722526
Punica granatum NC_045131.1 5 CH_pgr_544 2 2 0.000450214
Populus trichocarpa Chr10 5 CH_ptr_778 2 2 0.000867002
Populus trichocarpa Chr08 5 CH_ptr_779 2 2 0.000867002
Quercus lobata 6 5 CH_qlo_1543 3 21 0.000297145
Schrenkiella parvula ch3-1 5 CH_spa_162 3 4 0.00000312376
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_670 2 2 0.000557543
Arabidopsis lyrata scaffold_3 6 CH_aly_291 3 3 0.00000107829
Arabidopsis thaliana Chr3 6 CH_ath_259 3 4 0.000000590914
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_520 2 2 0.000827917
Camellia sinensis var. sinensis Chr5 6 CH_camsi_641 3 4 0.00000105963
Cannabis sativa NC_044376.1 6 CH_cansat_572 2 2 0.000656642
Carpinus fangiana Cfa06 6 CH_cfa_597 2 2 0.000757346
Corchorus olitorius AWUE01022414.1 6 CH_col_125 2 2 0.000292099
Lotus japonicus chr6 6 CH_lja_583 2 2 0.000715077
Nelumbo nucifera chr4 6 CH_nnu_586 2 2 0.000722526
Punica granatum NC_045131.1 6 CH_pgr_544 2 2 0.000450214
Populus trichocarpa Chr10 6 CH_ptr_778 2 2 0.000867002
Populus trichocarpa Chr08 6 CH_ptr_779 2 2 0.000867002
Quercus lobata 6 6 CH_qlo_1543 3 21 0.000297145
Schrenkiella parvula ch3-1 6 CH_spa_162 3 4 0.00000312376
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_670 2 2 0.000557543

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001