Functional clusters
Information
- Type InterPro
- Description Thioredoxin domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-10 | 5 | CH_aar_371 | 3 | 3 | 0.000520202 |
| Acer truncatum | chr11 | 5 | CH_acertr_330 | 4 | 4 | 0.000000358512 |
| Brassica carinata | ChrC08 | 5 | CH_bca_333 | 5 | 5 | 0.00000000233174 |
| Brassica oleracea | C6 | 5 | CH_bol_302 | 4 | 4 | 0.000000481742 |
| Cicer arietinum L. | Ca_LG2_v3 | 5 | CH_car_261 | 3 | 3 | 0.000189229 |
| Corylus avellana | 2 | 5 | CH_cav_472 | 4 | 10 | 0.000070334 |
| Chara braunii | BFEA01000402 | 5 | CH_cbr_225 | 3 | 4 | 0.000202987 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_115 | 7 | 14 | 0.0000000000116974 |
| Cucumis sativus L. | chr2 | 5 | CH_csa_369 | 3 | 3 | 0.000169492 |
| Daucus carota | DCARv2_Chr9 | 5 | CH_dca_122 | 5 | 5 | 0.000000000946297 |
| Davidia involucrata | GWHABJS00000018 | 5 | CH_din_617 | 3 | 3 | 0.000205383 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_589 | 3 | 3 | 0.0000981883 |
| Glycine max | Gm18 | 5 | CH_gma_899 | 3 | 3 | 0.000638012 |
| Glycine max | Gm09 | 5 | CH_gma_900 | 3 | 3 | 0.000638012 |
| Lupinus albus | Lalb_Chr04 | 5 | CH_lal_129 | 5 | 5 | 0.00000000329737 |
| Lotus japonicus | chr2 | 5 | CH_lja_231 | 4 | 4 | 0.000000572502 |
| Medicago truncatula | chr2 | 5 | CH_mtr_378 | 5 | 6 | 0.000000000976831 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_495 | 3 | 3 | 0.0000850004 |
| Phaseolus vulgaris | Chr02 | 5 | CH_pvu_561 | 3 | 3 | 0.000291434 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_547 | 5 | 18 | 0.00000649912 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_220 | 5 | 6 | 0.00000000406666 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_151 | 5 | 5 | 0.000000000283539 |
| Trochodendron aralioides | group12 | 5 | CH_tar_327 | 4 | 4 | 0.000000747039 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_729 | 3 | 4 | 0.00067296 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_444 | 3 | 3 | 0.000314824 |
| Vigna mungo | CM024074.1 | 5 | CH_vmu_489 | 3 | 3 | 0.000260928 |
| Aethionema arabicum | LG-10 | 6 | CH_aar_371 | 3 | 3 | 0.000520202 |
| Acer truncatum | chr11 | 6 | CH_acertr_330 | 4 | 4 | 0.000000358512 |
| Brassica carinata | ChrC08 | 6 | CH_bca_333 | 5 | 5 | 0.00000000233174 |
| Brassica oleracea | C6 | 6 | CH_bol_302 | 4 | 4 | 0.000000481742 |
| Cicer arietinum L. | Ca_LG2_v3 | 6 | CH_car_261 | 3 | 3 | 0.000189229 |
| Corylus avellana | 2 | 6 | CH_cav_472 | 4 | 10 | 0.000070334 |
| Chara braunii | BFEA01000402 | 6 | CH_cbr_225 | 3 | 4 | 0.000202987 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_115 | 7 | 14 | 0.0000000000116974 |
| Cucumis sativus L. | chr2 | 6 | CH_csa_369 | 3 | 3 | 0.000169492 |
| Daucus carota | DCARv2_Chr9 | 6 | CH_dca_122 | 5 | 5 | 0.000000000946297 |
| Davidia involucrata | GWHABJS00000018 | 6 | CH_din_617 | 3 | 3 | 0.000205383 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_589 | 3 | 3 | 0.0000981883 |
| Glycine max | Gm18 | 6 | CH_gma_899 | 3 | 3 | 0.000638012 |
| Glycine max | Gm09 | 6 | CH_gma_900 | 3 | 3 | 0.000638012 |
| Lupinus albus | Lalb_Chr04 | 6 | CH_lal_129 | 5 | 5 | 0.00000000329737 |
| Lotus japonicus | chr2 | 6 | CH_lja_231 | 4 | 4 | 0.000000572502 |
| Medicago truncatula | chr2 | 6 | CH_mtr_378 | 5 | 6 | 0.000000000976831 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_495 | 3 | 3 | 0.0000850004 |
| Phaseolus vulgaris | Chr02 | 6 | CH_pvu_561 | 3 | 3 | 0.000291434 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_547 | 5 | 18 | 0.00000649912 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_220 | 5 | 6 | 0.00000000406666 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_151 | 5 | 5 | 0.000000000283539 |
| Trochodendron aralioides | group12 | 6 | CH_tar_327 | 4 | 4 | 0.000000747039 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_729 | 3 | 4 | 0.00067296 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_444 | 3 | 3 | 0.000314824 |
| Vigna mungo | CM024074.1 | 6 | CH_vmu_489 | 3 | 3 | 0.000260928 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |