Functional clusters
Information
- Type InterPro
- Description ABC-2 type transporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 5 | CH_acertr_1028 | 3 | 5 | 0.000793051 |
| Actinidia chinensis | Lachesis_group18 | 5 | CH_ach_410 | 3 | 3 | 0.000202548 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_255 | 4 | 5 | 0.000000393844 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_227 | 4 | 7 | 0.000000202836 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 5 | CH_atr_250 | 4 | 5 | 0.000000554537 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1071 | 4 | 8 | 0.0000122401 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1926 | 3 | 4 | 0.000607626 |
| Brassica carinata | ChrC04 | 5 | CH_bca_730 | 4 | 5 | 0.000000876724 |
| Brassica napus | C04 | 5 | CH_bna_787 | 4 | 8 | 0.00000831421 |
| Brassica napus | A04 | 5 | CH_bna_841 | 4 | 9 | 0.0000149534 |
| Brassica oleracea | C4 | 5 | CH_bol_385 | 4 | 9 | 0.00000288873 |
| Brassica rapa | A04 | 5 | CH_bra_114 | 5 | 8 | 0.00000000543537 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 5 | CH_can_193 | 5 | 5 | 0.000000000908049 |
| Capsicum annuum | PGAv.1.6.scaffold1374 | 5 | CH_can_642 | 3 | 3 | 0.000226241 |
| Capsicum annuum | PGAv.1.6.scaffold706 | 5 | CH_can_643 | 3 | 3 | 0.000226241 |
| Corylus avellana | 11 | 5 | CH_cav_143 | 6 | 9 | 0.000000000338383 |
| Corylus avellana | 3 | 5 | CH_cav_214 | 5 | 7 | 0.0000000381162 |
| Corylus avellana | 9 | 5 | CH_cav_229 | 5 | 8 | 0.000000101451 |
| Corylus avellana | 11 | 5 | CH_cav_677 | 3 | 3 | 0.000350158 |
| Coffea canephora | chr11 | 5 | CH_ccan_82 | 6 | 79 | 0.000000000224547 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_365 | 4 | 4 | 0.000000986534 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_498 | 4 | 8 | 0.0000685129 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_329 | 4 | 6 | 0.0000010949 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_636 | 3 | 3 | 0.000177823 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_311 | 3 | 4 | 0.000366472 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_313 | 4 | 6 | 0.00000160413 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_582 | 3 | 3 | 0.000363897 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_561 | 5 | 5 | 0.00000000288715 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_714 | 8 | 62 | 0.000000108094 |
| Eutrema salsugineum | scaffold_16 | 5 | CH_esa_201 | 4 | 5 | 0.000000544264 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_668 | 4 | 6 | 0.00000503734 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_256 | 5 | 9 | 0.000000153251 |
| Helianthus annuus | HanXRQChr04 | 5 | CH_han_430 | 5 | 8 | 0.000000073843 |
| Helianthus annuus | HanXRQChr05 | 5 | CH_han_528 | 4 | 4 | 0.000000706847 |
| Hydrangea macrophylla | Hma1.2p1_0207F.1 | 5 | CH_hma_228 | 3 | 4 | 0.0000162829 |
| Lupinus albus | Lalb_Chr09 | 5 | CH_lal_554 | 3 | 3 | 0.000164075 |
| Lotus japonicus | chr4 | 5 | CH_lja_108 | 5 | 6 | 0.00000000224108 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_865 | 3 | 3 | 0.000166003 |
| Magnolia biondii | Chr05 | 5 | CH_mbi_1052 | 3 | 4 | 0.000294458 |
| Malus domestica | Chr12 | 5 | CH_mdo_1053 | 3 | 3 | 0.000170578 |
| Marchantia polymorpha | scaffold_109 | 5 | CH_mpo_199 | 3 | 4 | 0.000398801 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_42 | 8 | 9 | 2.03713e-17 |
| Prunus persica | Pp03 | 5 | CH_ppe_427 | 4 | 5 | 0.00000228354 |
| Papaver somniferum | NW_020625487.1 | 5 | CH_pso_499 | 6 | 34 | 0.00000019188 |
| Phaseolus vulgaris | Chr01 | 5 | CH_pvu_49 | 9 | 9 | 1.78133e-20 |
| Quercus lobata | 6 | 5 | CH_qlo_1614 | 3 | 3 | 0.000316191 |
| Quercus lobata | 11 | 5 | CH_qlo_715 | 5 | 7 | 0.0000000251431 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_446 | 5 | 7 | 0.00000000596199 |
| Salix brachista | GWHAAZH00000017 | 5 | CH_sbr_261 | 5 | 10 | 0.000000123928 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_317 | 8 | 11 | 7.09207e-16 |
| Selaginella moellendorffii | scaffold_69 | 5 | CH_smo_296 | 3 | 3 | 0.000382655 |
| Selaginella moellendorffii | scaffold_42 | 5 | CH_smo_72 | 6 | 15 | 0.0000000284733 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_141 | 4 | 5 | 0.000000740604 |
| Solanum tuberosum | ST4.03ch11 | 5 | CH_stu_649 | 3 | 3 | 0.0000922801 |
| Trochodendron aralioides | group6 | 5 | CH_tar_435 | 4 | 6 | 0.0000178271 |
| Theobroma cacao | Chromosome_5 | 5 | CH_tca_341 | 4 | 4 | 0.000000345142 |
| Tarenaya hassleriana | NW_010969548.1 | 5 | CH_tha_272 | 3 | 4 | 0.000288924 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 5 | CH_tpr_103 | 5 | 5 | 0.000000000237098 |
| Utricularia gibba | unitig_62 | 5 | CH_ugi_96 | 4 | 9 | 0.0000189666 |
| Utricularia gibba | unitig_748 | 5 | CH_ugi_97 | 4 | 9 | 0.0000189666 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_277 | 4 | 4 | 0.00000117397 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_54 | 9 | 17 | 0.0000000000000027866 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_397 | 3 | 3 | 0.000146709 |
| Vitis vinifera | chr9 | 5 | CH_vvi_19 | 16 | 21 | 8.77228e-34 |
| Vitis vinifera | chr6 | 5 | CH_vvi_298 | 6 | 19 | 0.000000236107 |
| Acer truncatum | chr12 | 6 | CH_acertr_1028 | 3 | 5 | 0.000793051 |
| Actinidia chinensis | Lachesis_group18 | 6 | CH_ach_410 | 3 | 3 | 0.000202548 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_255 | 4 | 5 | 0.000000393844 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_227 | 4 | 7 | 0.000000202836 |
| Amborella trichopoda | AmTr_v1.0_scaffold00069 | 6 | CH_atr_250 | 4 | 5 | 0.000000554537 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1071 | 4 | 8 | 0.0000122401 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1926 | 3 | 4 | 0.000607626 |
| Brassica carinata | ChrC04 | 6 | CH_bca_730 | 4 | 5 | 0.000000876724 |
| Brassica napus | C04 | 6 | CH_bna_787 | 4 | 8 | 0.00000831421 |
| Brassica napus | A04 | 6 | CH_bna_841 | 4 | 9 | 0.0000149534 |
| Brassica oleracea | C4 | 6 | CH_bol_385 | 4 | 9 | 0.00000288873 |
| Brassica rapa | A04 | 6 | CH_bra_114 | 5 | 8 | 0.00000000543537 |
| Capsicum annuum | PGAv.1.6.scaffold523 | 6 | CH_can_193 | 5 | 5 | 0.000000000908049 |
| Capsicum annuum | PGAv.1.6.scaffold1374 | 6 | CH_can_642 | 3 | 3 | 0.000226241 |
| Capsicum annuum | PGAv.1.6.scaffold706 | 6 | CH_can_643 | 3 | 3 | 0.000226241 |
| Corylus avellana | 11 | 6 | CH_cav_143 | 6 | 9 | 0.000000000338383 |
| Corylus avellana | 3 | 6 | CH_cav_214 | 5 | 7 | 0.0000000381162 |
| Corylus avellana | 9 | 6 | CH_cav_229 | 5 | 8 | 0.000000101451 |
| Corylus avellana | 11 | 6 | CH_cav_677 | 3 | 3 | 0.000350158 |
| Coffea canephora | chr11 | 6 | CH_ccan_82 | 6 | 79 | 0.000000000224547 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_365 | 4 | 4 | 0.000000986534 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_498 | 4 | 8 | 0.0000685129 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_329 | 4 | 6 | 0.0000010949 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_636 | 3 | 3 | 0.000177823 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_311 | 3 | 4 | 0.000366472 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_313 | 4 | 6 | 0.00000160413 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_582 | 3 | 3 | 0.000363897 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_561 | 5 | 5 | 0.00000000288715 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_714 | 8 | 62 | 0.000000108094 |
| Eutrema salsugineum | scaffold_16 | 6 | CH_esa_201 | 4 | 5 | 0.000000544264 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_668 | 4 | 6 | 0.00000503734 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_256 | 5 | 9 | 0.000000153251 |
| Helianthus annuus | HanXRQChr04 | 6 | CH_han_430 | 5 | 8 | 0.000000073843 |
| Helianthus annuus | HanXRQChr05 | 6 | CH_han_528 | 4 | 4 | 0.000000706847 |
| Hydrangea macrophylla | Hma1.2p1_0207F.1 | 6 | CH_hma_228 | 3 | 4 | 0.0000162829 |
| Lupinus albus | Lalb_Chr09 | 6 | CH_lal_554 | 3 | 3 | 0.000164075 |
| Lotus japonicus | chr4 | 6 | CH_lja_108 | 5 | 6 | 0.00000000224108 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_865 | 3 | 3 | 0.000166003 |
| Magnolia biondii | Chr05 | 6 | CH_mbi_1052 | 3 | 4 | 0.000294458 |
| Malus domestica | Chr12 | 6 | CH_mdo_1053 | 3 | 3 | 0.000170578 |
| Marchantia polymorpha | scaffold_109 | 6 | CH_mpo_199 | 3 | 4 | 0.000398801 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_42 | 8 | 9 | 2.03713e-17 |
| Prunus persica | Pp03 | 6 | CH_ppe_427 | 4 | 5 | 0.00000228354 |
| Papaver somniferum | NW_020625487.1 | 6 | CH_pso_499 | 6 | 34 | 0.00000019188 |
| Phaseolus vulgaris | Chr01 | 6 | CH_pvu_49 | 9 | 9 | 1.78133e-20 |
| Quercus lobata | 6 | 6 | CH_qlo_1614 | 3 | 3 | 0.000316191 |
| Quercus lobata | 11 | 6 | CH_qlo_715 | 5 | 7 | 0.0000000251431 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_446 | 5 | 7 | 0.00000000596199 |
| Salix brachista | GWHAAZH00000017 | 6 | CH_sbr_261 | 5 | 10 | 0.000000123928 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_317 | 8 | 11 | 7.09207e-16 |
| Selaginella moellendorffii | scaffold_69 | 6 | CH_smo_296 | 3 | 3 | 0.000382655 |
| Selaginella moellendorffii | scaffold_42 | 6 | CH_smo_72 | 6 | 15 | 0.0000000284733 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_141 | 4 | 5 | 0.000000740604 |
| Solanum tuberosum | ST4.03ch11 | 6 | CH_stu_649 | 3 | 3 | 0.0000922801 |
| Trochodendron aralioides | group6 | 6 | CH_tar_435 | 4 | 6 | 0.0000178271 |
| Theobroma cacao | Chromosome_5 | 6 | CH_tca_341 | 4 | 4 | 0.000000345142 |
| Tarenaya hassleriana | NW_010969548.1 | 6 | CH_tha_272 | 3 | 4 | 0.000288924 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 6 | CH_tpr_103 | 5 | 5 | 0.000000000237098 |
| Utricularia gibba | unitig_62 | 6 | CH_ugi_96 | 4 | 9 | 0.0000189666 |
| Utricularia gibba | unitig_748 | 6 | CH_ugi_97 | 4 | 9 | 0.0000189666 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_277 | 4 | 4 | 0.00000117397 |
| Vaccinium macrocarpon | chr1_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_54 | 9 | 17 | 0.0000000000000027866 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_397 | 3 | 3 | 0.000146709 |
| Vitis vinifera | chr9 | 6 | CH_vvi_19 | 16 | 21 | 8.77228e-34 |
| Vitis vinifera | chr6 | 6 | CH_vvi_298 | 6 | 19 | 0.000000236107 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |