Functional clusters

Information

  • Type InterPro
  • Description Leucine-rich repeat-containing N-terminal, plant-type

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_144 5 10 0.00000744617
Anthoceros agrestis Sc2ySwM_228 5 CH_aag_300 4 7 0.000256952
Arabidopsis lyrata scaffold_1 5 CH_aly_158 7 10 0.00000000379569
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 5 CH_amhyb_107 6 8 0.000000126256
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_1194 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_1195 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 5 CH_arhy_1196 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 5 CH_arhy_263 12 32 0.00000000000524733
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 5 CH_arhy_597 8 21 0.000000694178
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 5 CH_arhy_73 15 18 1.69436e-23
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 5 CH_arhy_910 6 13 0.0000716576
Arabidopsis thaliana Chr5 5 CH_ath_435 4 6 0.0000911611
Arabidopsis thaliana Chr1 5 CH_ath_571 5 22 0.000465698
Brassica carinata ChrC06 5 CH_bca_1394 5 9 0.000103032
Brassica carinata ChrB06 5 CH_bca_1968 4 5 0.000675708
Brassica carinata ChrB01 5 CH_bca_582 7 15 0.000000193339
Brassica carinata ChrC06 5 CH_bca_865 6 11 0.00000230435
Brassica carinata ChrB05 5 CH_bca_962 5 6 0.00000498243
Brassica napus A05 5 CH_bna_1111 4 4 0.00015307
Brassica napus C05 5 CH_bna_1465 4 5 0.000761597
Brassica napus A10 5 CH_bna_381 7 12 0.0000000268833
Brassica napus C09 5 CH_bna_668 6 11 0.00000257304
Brassica oleracea C9 5 CH_bol_356 5 6 0.00000177122
Brassica oleracea C5 5 CH_bol_704 4 5 0.000272064
Brassica rapa A10 5 CH_bra_125 7 11 0.0000000134263
Brassica rapa A01 5 CH_bra_378 4 4 0.00011945
Brassica rapa A03 5 CH_bra_379 4 4 0.00011945
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_147 9 30 0.000000029887
Camellia sinensis var. sinensis Chr3 5 CH_camsi_1255 5 9 0.000350153
Camellia sinensis var. sinensis Chr6 5 CH_camsi_763 6 10 0.00000532152
Camellia sinensis var. sinensis Chr9 5 CH_camsi_808 7 19 0.0000108972
Camellia sinensis var. sinensis Chr14 5 CH_camsi_976 5 7 0.0000592589
Cannabis sativa NC_044379.1 5 CH_cansat_165 9 28 0.0000000121722
Corylus avellana 10 5 CH_cav_202 7 10 0.0000000322974
Corylus avellana 7 5 CH_cav_579 5 8 0.000151247
Corylus avellana 8 5 CH_cav_750 6 18 0.000464025
Citrus clementina scaffold_9 5 CH_ccl_254 9 17 0.0000000131693
Citrus clementina scaffold_6 5 CH_ccl_470 7 16 0.0000307095
Cardamine hirsuta Chr6 5 CH_chi_271 10 49 0.000000143478
Carya illinoinensis Chr03 5 CH_cil_300 6 6 0.0000000386418
Carya illinoinensis Chr16 5 CH_cil_728 4 4 0.000368246
Carya illinoinensis Chr08 5 CH_cil_729 4 4 0.000368246
Chenopodium quinoa C_Quinoa_Scaffold_3792 5 CH_cqu_408 8 25 0.000000795416
Capsella rubella scaffold_6 5 CH_cru_391 9 54 0.0000218517
Daucus carota DCARv2_Chr9 5 CH_dca_572 4 4 0.000275155
Durio zibethinus NW_019167926.1 5 CH_dzi_102 10 19 0.000000000235736
Durio zibethinus NW_019167938.1 5 CH_dzi_617 4 4 0.000934804
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_169 11 55 0.00000000156076
Eucalyptus grandis Chr07 5 CH_egr_1116 7 16 0.0000817707
Eucalyptus grandis Chr06 5 CH_egr_266 20 70 0.00000000000000176627
Eucalyptus grandis Chr08 5 CH_egr_965 6 8 0.0000141076
Eutrema salsugineum scaffold_5 5 CH_esa_200 6 9 0.000000541243
Eutrema salsugineum scaffold_2 5 CH_esa_367 8 49 0.000135384
Gossypium hirsutum A04 5 CH_ghi_319 7 7 0.00000000067532
Glycine max Gm14 5 CH_gma_580 10 64 0.0000623958
Glycine max Gm10 5 CH_gma_924 5 9 0.000745541
Gossypium raimondii Chr09 5 CH_gra_102 11 15 0.0000000000000299951
Gossypium raimondii Chr02 5 CH_gra_249 6 6 0.000000103916
Gossypium raimondii Chr02 5 CH_gra_652 4 4 0.000745191
Helianthus annuus HanXRQChr14 5 CH_han_560 10 50 0.00000153801
Lotus japonicus chr2 5 CH_lja_377 5 7 0.0000393903
Lonicera japonica GWHAAZE00000005 5 CH_lonja_113 20 71 1.13944e-18
Lonicera japonica GWHAAZE00000002 5 CH_lonja_402 8 15 0.0000000331879
Lonicera japonica GWHAAZE00000006 5 CH_lonja_84 19 46 2.60543e-21
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_152 13 42 0.000000000005268
Lactuca sativa Lsat_1_v8_lg_9 5 CH_lsa_377 7 12 0.000000254927
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_455 7 15 0.00000201891
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_474 5 5 0.00000354915
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_508 10 56 0.00000720595
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_563 5 6 0.0000211215
Lactuca sativa Lsat_1_v8_lg_7 5 CH_lsa_637 6 14 0.0000970894
Magnolia biondii Chr17 5 CH_mbi_127 15 77 0.000000000000109192
Magnolia biondii Chr14 5 CH_mbi_711 9 71 0.0000407054
Manihot esculenta Chromosome08 5 CH_mes_226 7 7 0.00000000193128
Medicago truncatula chr8 5 CH_mtr_1013 5 7 0.0000918253
Medicago truncatula chr5 5 CH_mtr_197 13 30 0.0000000000000354511
Medicago truncatula chr7 5 CH_mtr_694 6 8 0.00000119429
Oryza sativa ssp. japonica chr02 5 CH_osa_13 19 34 7.22631e-28
Oryza sativa ssp. japonica chr05 5 CH_osa_706 4 5 0.000504747
Punica granatum NC_045131.1 5 CH_pgr_329 6 10 0.00000565263
Punica granatum NC_045131.1 5 CH_pgr_396 6 13 0.0000450147
Prunus persica Pp08 5 CH_ppe_459 5 5 0.00000563151
Prunus persica Pp06 5 CH_ppe_548 5 6 0.0000334643
Prunus persica Pp06 5 CH_ppe_637 5 7 0.000115999
Prunus persica Pp06 5 CH_ppe_638 5 7 0.000115999
Prunus persica Pp07 5 CH_ppe_639 5 7 0.000115999
Populus trichocarpa Chr15 5 CH_ptr_363 7 11 0.000000476787
Populus trichocarpa Chr12 5 CH_ptr_59 17 31 2.29146e-20
Populus trichocarpa Chr15 5 CH_ptr_657 6 14 0.000339629
Phaseolus vulgaris Chr07 5 CH_pvu_171 7 8 0.00000000231919
Phaseolus vulgaris Chr02 5 CH_pvu_559 4 4 0.000289802
Quercus lobata 10 5 CH_qlo_1107 7 12 0.0000119937
Quercus lobata 1 5 CH_qlo_1171 8 20 0.0000290659
Quercus lobata 9 5 CH_qlo_1205 7 14 0.0000504404
Quercus lobata 4 5 CH_qlo_1310 5 5 0.0000564681
Quercus lobata 9 5 CH_qlo_1311 5 5 0.0000564681
Quercus lobata 8 5 CH_qlo_158 25 80 2.63611e-20
Quercus lobata 10 5 CH_qlo_1631 6 11 0.000412428
Quercus lobata 4 5 CH_qlo_224 15 22 1.63703e-17
Quercus lobata 4 5 CH_qlo_227 23 80 1.75396e-17
Quercus lobata 5 5 CH_qlo_797 11 32 0.000000124541
Quercus lobata 5 5 CH_qlo_924 14 72 0.000000764012
Quercus lobata 4 5 CH_qlo_94 26 63 5.70627e-25
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_438 14 77 0.00000000395697
Rhododendron simsii chr07 5 CH_rsi_1050 5 11 0.000997187
Rhododendron simsii chr11 5 CH_rsi_206 15 73 0.0000000000082722
Rhododendron simsii chr03 5 CH_rsi_335 12 60 0.0000000117551
Rhododendron simsii chr12 5 CH_rsi_622 6 13 0.0000341077
Salvia bowleyana GWHASIU00000002 5 CH_sbo_522 8 42 0.0000778145
Salix brachista GWHAAZH00000018 5 CH_sbr_116 13 43 0.00000000000681775
Salix brachista GWHAAZH00000005 5 CH_sbr_46 20 75 8.2695e-19
Sechium edule LG13 5 CH_sed_211 7 17 0.00000147498
Sechium edule LG14 5 CH_sed_99 8 13 0.000000000833895
Sequoiadendron giganteum chr4 5 CH_sgi_1142 6 7 0.000000207907
Sequoiadendron giganteum chr9 5 CH_sgi_1445 7 18 0.00000818204
Sequoiadendron giganteum chr10 5 CH_sgi_2353 4 4 0.000336055
Sequoiadendron giganteum chr1 5 CH_sgi_2364 5 9 0.000387738
Sequoiadendron giganteum chr10 5 CH_sgi_487 9 11 0.00000000000133593
Sequoiadendron giganteum chr8 5 CH_sgi_706 9 17 0.000000000561272
Solanum lycopersicum SL4.0ch12 5 CH_sly_379 7 17 0.000000959326
Selenicereus undatus Scaffold_33673 5 CH_sun_96 6 12 0.000000497414
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_359 8 30 0.00000814863
Trifolium pratense Tp57577_TGAC_v2_LG7 5 CH_tpr_532 5 8 0.000111826
Tripterygium wilfordii NC_052248.1 5 CH_twi_111 8 12 0.00000000100578
Vigna mungo CM024077.1 5 CH_vmu_49 12 30 0.000000000000441042
Vigna mungo CM024073.1 5 CH_vmu_73 9 15 0.0000000000447097
Vitis vinifera chr8 5 CH_vvi_336 6 9 0.000000602938
Vitis vinifera chr7 5 CH_vvi_550 4 4 0.0001143
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_144 5 10 0.00000744617
Anthoceros agrestis Sc2ySwM_228 6 CH_aag_300 4 7 0.000256952
Arabidopsis lyrata scaffold_1 6 CH_aly_158 7 10 0.00000000379569
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 6 CH_amhyb_107 6 8 0.000000126256
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_1194 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_1195 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 6 CH_arhy_1196 4 4 0.000510198
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 6 CH_arhy_263 12 32 0.00000000000524733
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.04 6 CH_arhy_597 8 21 0.000000694178
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 6 CH_arhy_73 15 18 1.69436e-23
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.11 6 CH_arhy_910 6 13 0.0000716576
Arabidopsis thaliana Chr5 6 CH_ath_435 4 6 0.0000911611
Arabidopsis thaliana Chr1 6 CH_ath_571 5 22 0.000465698
Brassica carinata ChrC06 6 CH_bca_1394 5 9 0.000103032
Brassica carinata ChrB06 6 CH_bca_1968 4 5 0.000675708
Brassica carinata ChrB01 6 CH_bca_582 7 15 0.000000193339
Brassica carinata ChrC06 6 CH_bca_865 6 11 0.00000230435
Brassica carinata ChrB05 6 CH_bca_962 5 6 0.00000498243
Brassica napus A05 6 CH_bna_1111 4 4 0.00015307
Brassica napus C05 6 CH_bna_1465 4 5 0.000761597
Brassica napus A10 6 CH_bna_381 7 12 0.0000000268833
Brassica napus C09 6 CH_bna_668 6 11 0.00000257304
Brassica oleracea C9 6 CH_bol_356 5 6 0.00000177122
Brassica oleracea C5 6 CH_bol_704 4 5 0.000272064
Brassica rapa A10 6 CH_bra_125 7 11 0.0000000134263
Brassica rapa A01 6 CH_bra_378 4 4 0.00011945
Brassica rapa A03 6 CH_bra_379 4 4 0.00011945
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_147 9 30 0.000000029887
Camellia sinensis var. sinensis Chr3 6 CH_camsi_1255 5 9 0.000350153
Camellia sinensis var. sinensis Chr6 6 CH_camsi_763 6 10 0.00000532152
Camellia sinensis var. sinensis Chr9 6 CH_camsi_808 7 19 0.0000108972
Camellia sinensis var. sinensis Chr14 6 CH_camsi_976 5 7 0.0000592589
Cannabis sativa NC_044379.1 6 CH_cansat_165 9 28 0.0000000121722
Corylus avellana 10 6 CH_cav_202 7 10 0.0000000322974
Corylus avellana 7 6 CH_cav_579 5 8 0.000151247
Corylus avellana 8 6 CH_cav_750 6 18 0.000464025
Citrus clementina scaffold_9 6 CH_ccl_254 9 17 0.0000000131693
Citrus clementina scaffold_6 6 CH_ccl_470 7 16 0.0000307095
Cardamine hirsuta Chr6 6 CH_chi_271 10 49 0.000000143478
Carya illinoinensis Chr03 6 CH_cil_300 6 6 0.0000000386418
Carya illinoinensis Chr16 6 CH_cil_728 4 4 0.000368246
Carya illinoinensis Chr08 6 CH_cil_729 4 4 0.000368246
Cucumis melo chr09 6 CH_cme_214 8 41 0.00000231529
Chenopodium quinoa C_Quinoa_Scaffold_3792 6 CH_cqu_408 8 25 0.000000795416
Capsella rubella scaffold_6 6 CH_cru_391 9 54 0.0000218517
Daucus carota DCARv2_Chr9 6 CH_dca_572 4 4 0.000275155
Durio zibethinus NW_019167926.1 6 CH_dzi_102 10 19 0.000000000235736
Durio zibethinus NW_019167938.1 6 CH_dzi_617 4 4 0.000934804
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_169 11 55 0.00000000156076
Eucalyptus grandis Chr07 6 CH_egr_1116 7 16 0.0000817707
Eucalyptus grandis Chr06 6 CH_egr_266 20 70 0.00000000000000176627
Eucalyptus grandis Chr08 6 CH_egr_965 6 8 0.0000141076
Eutrema salsugineum scaffold_5 6 CH_esa_200 6 9 0.000000541243
Eutrema salsugineum scaffold_2 6 CH_esa_367 8 49 0.000135384
Gossypium hirsutum A04 6 CH_ghi_319 7 7 0.00000000067532
Glycine max Gm14 6 CH_gma_580 10 64 0.0000623958
Glycine max Gm10 6 CH_gma_924 5 9 0.000745541
Gossypium raimondii Chr09 6 CH_gra_102 11 15 0.0000000000000299951
Gossypium raimondii Chr02 6 CH_gra_249 6 6 0.000000103916
Gossypium raimondii Chr02 6 CH_gra_652 4 4 0.000745191
Helianthus annuus HanXRQChr14 6 CH_han_560 10 50 0.00000153801
Lotus japonicus chr2 6 CH_lja_377 5 7 0.0000393903
Lonicera japonica GWHAAZE00000005 6 CH_lonja_113 20 71 1.13944e-18
Lonicera japonica GWHAAZE00000002 6 CH_lonja_402 8 15 0.0000000331879
Lonicera japonica GWHAAZE00000006 6 CH_lonja_84 19 46 2.60543e-21
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_152 13 42 0.000000000005268
Lactuca sativa Lsat_1_v8_lg_9 6 CH_lsa_377 7 12 0.000000254927
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_455 7 15 0.00000201891
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_474 5 5 0.00000354915
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_508 10 56 0.00000720595
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_563 5 6 0.0000211215
Lactuca sativa Lsat_1_v8_lg_7 6 CH_lsa_637 6 14 0.0000970894
Magnolia biondii Chr17 6 CH_mbi_127 15 77 0.000000000000109192
Magnolia biondii Chr14 6 CH_mbi_711 9 71 0.0000407054
Manihot esculenta Chromosome08 6 CH_mes_226 7 7 0.00000000193128
Medicago truncatula chr8 6 CH_mtr_1013 5 7 0.0000918253
Medicago truncatula chr5 6 CH_mtr_197 13 30 0.0000000000000354511
Medicago truncatula chr7 6 CH_mtr_694 6 8 0.00000119429
Oryza sativa ssp. japonica chr02 6 CH_osa_13 19 34 7.22631e-28
Oryza sativa ssp. japonica chr05 6 CH_osa_706 4 5 0.000504747
Punica granatum NC_045131.1 6 CH_pgr_329 6 10 0.00000565263
Punica granatum NC_045131.1 6 CH_pgr_396 6 13 0.0000450147
Prunus persica Pp08 6 CH_ppe_459 5 5 0.00000563151
Prunus persica Pp06 6 CH_ppe_548 5 6 0.0000334643
Prunus persica Pp06 6 CH_ppe_637 5 7 0.000115999
Prunus persica Pp06 6 CH_ppe_638 5 7 0.000115999
Prunus persica Pp07 6 CH_ppe_639 5 7 0.000115999
Populus trichocarpa Chr15 6 CH_ptr_363 7 11 0.000000476787
Populus trichocarpa Chr12 6 CH_ptr_59 17 31 2.29146e-20
Populus trichocarpa Chr15 6 CH_ptr_657 6 14 0.000339629
Phaseolus vulgaris Chr07 6 CH_pvu_171 7 8 0.00000000231919
Phaseolus vulgaris Chr02 6 CH_pvu_559 4 4 0.000289802
Quercus lobata 10 6 CH_qlo_1107 7 12 0.0000119937
Quercus lobata 1 6 CH_qlo_1171 8 20 0.0000290659
Quercus lobata 9 6 CH_qlo_1205 7 14 0.0000504404
Quercus lobata 4 6 CH_qlo_1310 5 5 0.0000564681
Quercus lobata 9 6 CH_qlo_1311 5 5 0.0000564681
Quercus lobata 8 6 CH_qlo_158 25 80 2.63611e-20
Quercus lobata 10 6 CH_qlo_1631 6 11 0.000412428
Quercus lobata 4 6 CH_qlo_224 15 22 1.63703e-17
Quercus lobata 4 6 CH_qlo_227 23 80 1.75396e-17
Quercus lobata 5 6 CH_qlo_797 11 32 0.000000124541
Quercus lobata 5 6 CH_qlo_924 14 72 0.000000764012
Quercus lobata 4 6 CH_qlo_94 26 63 5.70627e-25
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_438 14 77 0.00000000395697
Rhododendron simsii chr07 6 CH_rsi_1050 5 11 0.000997187
Rhododendron simsii chr11 6 CH_rsi_206 15 73 0.0000000000082722
Rhododendron simsii chr03 6 CH_rsi_335 12 60 0.0000000117551
Rhododendron simsii chr12 6 CH_rsi_622 6 13 0.0000341077
Salvia bowleyana GWHASIU00000002 6 CH_sbo_522 8 42 0.0000778145
Salix brachista GWHAAZH00000018 6 CH_sbr_116 13 43 0.00000000000681775
Salix brachista GWHAAZH00000005 6 CH_sbr_46 20 75 8.2695e-19
Sechium edule LG13 6 CH_sed_211 7 17 0.00000147498
Sechium edule LG14 6 CH_sed_99 8 13 0.000000000833895
Sequoiadendron giganteum chr4 6 CH_sgi_1142 6 7 0.000000207907
Sequoiadendron giganteum chr9 6 CH_sgi_1445 7 18 0.00000818204
Sequoiadendron giganteum chr10 6 CH_sgi_2353 4 4 0.000336055
Sequoiadendron giganteum chr1 6 CH_sgi_2364 5 9 0.000387738
Sequoiadendron giganteum chr10 6 CH_sgi_487 9 11 0.00000000000133593
Sequoiadendron giganteum chr8 6 CH_sgi_706 9 17 0.000000000561272
Solanum lycopersicum SL4.0ch12 6 CH_sly_379 7 17 0.000000959326
Selenicereus undatus Scaffold_33673 6 CH_sun_96 6 12 0.000000497414
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_359 8 30 0.00000814863
Trifolium pratense Tp57577_TGAC_v2_LG7 6 CH_tpr_532 5 8 0.000111826
Tripterygium wilfordii NC_052248.1 6 CH_twi_111 8 12 0.00000000100578
Vigna mungo CM024077.1 6 CH_vmu_49 12 30 0.000000000000441042
Vigna mungo CM024073.1 6 CH_vmu_73 9 15 0.0000000000447097
Vitis vinifera chr8 6 CH_vvi_336 6 9 0.000000602938
Vitis vinifera chr7 6 CH_vvi_550 4 4 0.0001143

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001