Functional clusters
Information
- Type InterPro
- Description Cathepsin propeptide inhibitor domain (I29)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_173 | 5 | 13 | 0.00000000276291 |
| Actinidia chinensis | Lachesis_group27 | 5 | CH_ach_54 | 5 | 6 | 0.000000000333079 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_438 | 4 | 4 | 0.0000000235739 |
| Brassica napus | A09 | 5 | CH_bna_66 | 8 | 14 | 1.3304e-16 |
| Brassica napus | C05 | 5 | CH_bna_673 | 4 | 7 | 0.00000262744 |
| Brassica oleracea | C5 | 5 | CH_bol_292 | 4 | 6 | 0.000000392232 |
| Brassica rapa | A09 | 5 | CH_bra_222 | 4 | 7 | 0.00000147863 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_329 | 5 | 10 | 0.00000000197793 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_360 | 7 | 72 | 0.00000000444829 |
| Cannabis sativa | NC_044370.1 | 5 | CH_cansat_378 | 3 | 4 | 0.0000594704 |
| Cannabis sativa | NC_044377.1 | 5 | CH_cansat_425 | 3 | 5 | 0.000148591 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_175 | 3 | 3 | 0.0000297678 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_237 | 4 | 18 | 0.0000876553 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_241 | 5 | 31 | 0.000000181339 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_117 | 4 | 8 | 0.000000447711 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1829 | 5 | CH_cqu_148 | 7 | 35 | 0.0000000000198845 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_418 | 3 | 3 | 0.0000479863 |
| Durio zibethinus | NW_019167982.1 | 5 | CH_dzi_261 | 5 | 28 | 0.00000126433 |
| Durio zibethinus | NW_019168470.1 | 5 | CH_dzi_70 | 6 | 9 | 0.000000000000786129 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_461 | 3 | 3 | 0.0000135764 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_183 | 6 | 6 | 0.000000000000124155 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_231 | 6 | 8 | 0.00000000000347004 |
| Lupinus albus | Lalb_Chr11 | 5 | CH_lal_380 | 4 | 17 | 0.0000418912 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_168 | 5 | 5 | 0.0000000000197395 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_569 | 3 | 3 | 0.0000282969 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_570 | 3 | 3 | 0.0000282969 |
| Malus domestica | Chr12 | 5 | CH_mdo_1145 | 3 | 4 | 0.000252264 |
| Malus domestica | Chr05 | 5 | CH_mdo_709 | 4 | 9 | 0.00000810927 |
| Manihot esculenta | Chromosome16 | 5 | CH_mes_397 | 5 | 26 | 0.00000338114 |
| Manihot esculenta | Chromosome17 | 5 | CH_mes_454 | 4 | 12 | 0.0000247888 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_195 | 6 | 44 | 0.0000000933817 |
| Olea europaea | chr16 | 5 | CH_oeu_103 | 4 | 4 | 0.00000000800832 |
| Olea europaea | chr21 | 5 | CH_oeu_11 | 10 | 18 | 9.18159e-24 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_37 | 10 | 33 | 2.15921e-18 |
| Prunus persica | Pp04 | 5 | CH_ppe_550 | 3 | 3 | 0.0000375207 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_6 | 13 | 42 | 3.20998e-27 |
| Papaver somniferum | NW_020648082.1 | 5 | CH_pso_458 | 4 | 7 | 0.0000000792299 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_269 | 5 | 10 | 0.0000000157405 |
| Quercus lobata | 8 | 5 | CH_qlo_1084 | 4 | 12 | 0.00000832152 |
| Quercus lobata | 4 | 5 | CH_qlo_208 | 7 | 7 | 6.37399e-18 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1420 | 4 | 24 | 0.000677463 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_211 | 6 | 11 | 0.0000000000105047 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_615 | 3 | 3 | 0.0000309827 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_509 | 3 | 3 | 0.0000169292 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_458 | 3 | 3 | 0.0000108438 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_508 | 3 | 3 | 0.0000129049 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_56 | 10 | 43 | 4.28677e-19 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_268 | 5 | 23 | 0.00000116365 |
| Utricularia gibba | unitig_85 | 5 | CH_ugi_9 | 7 | 9 | 0.0000000000000072086 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_101 | 6 | 22 | 0.00000000111058 |
| Vanilla planifolia | CM028155.1 | 5 | CH_vpl_227 | 5 | 41 | 0.00000191579 |
| Vitis vinifera | chr12 | 5 | CH_vvi_143 | 5 | 6 | 0.0000000000129029 |
| Vitis vinifera | chr18 | 5 | CH_vvi_403 | 4 | 14 | 0.0000040256 |
| Acer truncatum | chr13 | 6 | CH_acertr_173 | 5 | 13 | 0.00000000276291 |
| Actinidia chinensis | Lachesis_group27 | 6 | CH_ach_54 | 5 | 6 | 0.000000000333079 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_438 | 4 | 4 | 0.0000000235739 |
| Brassica napus | A09 | 6 | CH_bna_66 | 8 | 14 | 1.3304e-16 |
| Brassica napus | C05 | 6 | CH_bna_673 | 4 | 7 | 0.00000262744 |
| Brassica oleracea | C5 | 6 | CH_bol_292 | 4 | 6 | 0.000000392232 |
| Brassica rapa | A09 | 6 | CH_bra_222 | 4 | 7 | 0.00000147863 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_329 | 5 | 10 | 0.00000000197793 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_360 | 7 | 72 | 0.00000000444829 |
| Cannabis sativa | NC_044370.1 | 6 | CH_cansat_378 | 3 | 4 | 0.0000594704 |
| Cannabis sativa | NC_044377.1 | 6 | CH_cansat_425 | 3 | 5 | 0.000148591 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_175 | 3 | 3 | 0.0000297678 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_237 | 4 | 18 | 0.0000876553 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_241 | 5 | 31 | 0.000000181339 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_117 | 4 | 8 | 0.000000447711 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1829 | 6 | CH_cqu_148 | 7 | 35 | 0.0000000000198845 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_418 | 3 | 3 | 0.0000479863 |
| Durio zibethinus | NW_019167982.1 | 6 | CH_dzi_261 | 5 | 28 | 0.00000126433 |
| Durio zibethinus | NW_019168470.1 | 6 | CH_dzi_70 | 6 | 9 | 0.000000000000786129 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_461 | 3 | 3 | 0.0000135764 |
| Fragaria x ananassa | Fvb6-4 | 6 | CH_fan_863 | 3 | 3 | 0.000140628 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_183 | 6 | 6 | 0.000000000000124155 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_231 | 6 | 8 | 0.00000000000347004 |
| Lupinus albus | Lalb_Chr11 | 6 | CH_lal_380 | 4 | 17 | 0.0000418912 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_168 | 5 | 5 | 0.0000000000197395 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_569 | 3 | 3 | 0.0000282969 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_570 | 3 | 3 | 0.0000282969 |
| Malus domestica | Chr12 | 6 | CH_mdo_1145 | 3 | 4 | 0.000252264 |
| Malus domestica | Chr05 | 6 | CH_mdo_709 | 4 | 9 | 0.00000810927 |
| Manihot esculenta | Chromosome16 | 6 | CH_mes_397 | 5 | 26 | 0.00000338114 |
| Manihot esculenta | Chromosome17 | 6 | CH_mes_454 | 4 | 12 | 0.0000247888 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_195 | 6 | 44 | 0.0000000933817 |
| Olea europaea | chr16 | 6 | CH_oeu_103 | 4 | 4 | 0.00000000800832 |
| Olea europaea | chr21 | 6 | CH_oeu_11 | 10 | 18 | 9.18159e-24 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_37 | 10 | 33 | 2.15921e-18 |
| Prunus persica | Pp04 | 6 | CH_ppe_550 | 3 | 3 | 0.0000375207 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_6 | 13 | 42 | 3.20998e-27 |
| Papaver somniferum | NW_020648082.1 | 6 | CH_pso_458 | 4 | 7 | 0.0000000792299 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_269 | 5 | 10 | 0.0000000157405 |
| Quercus lobata | 8 | 6 | CH_qlo_1084 | 4 | 12 | 0.00000832152 |
| Quercus lobata | 4 | 6 | CH_qlo_208 | 7 | 7 | 6.37399e-18 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1420 | 4 | 24 | 0.000677463 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_211 | 6 | 11 | 0.0000000000105047 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_615 | 3 | 3 | 0.0000309827 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_509 | 3 | 3 | 0.0000169292 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_458 | 3 | 3 | 0.0000108438 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_508 | 3 | 3 | 0.0000129049 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_56 | 10 | 43 | 4.28677e-19 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_268 | 5 | 23 | 0.00000116365 |
| Utricularia gibba | unitig_85 | 6 | CH_ugi_9 | 7 | 9 | 0.0000000000000072086 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_101 | 6 | 22 | 0.00000000111058 |
| Vanilla planifolia | CM028155.1 | 6 | CH_vpl_227 | 5 | 41 | 0.00000191579 |
| Vitis vinifera | chr12 | 6 | CH_vvi_143 | 5 | 6 | 0.0000000000129029 |
| Vitis vinifera | chr18 | 6 | CH_vvi_403 | 4 | 14 | 0.0000040256 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |