Functional clusters

Information

  • Type InterPro
  • Description Histone acetyltransferase Rtt109/CBP

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group3 5 CH_ach_153 3 3 0.000000730343
Arabidopsis lyrata scaffold_1 5 CH_aly_734 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 5 CH_arhy_1310 2 2 0.000838273
Arabidopsis thaliana Chr1 5 CH_ath_562 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00009 5 CH_atr_179 4 7 0.0000000260371
Brassica carinata ChrB04 5 CH_bca_548 4 11 0.000000122171
Brassica carinata ChrC07 5 CH_bca_812 3 3 0.0000015765
Brassica napus C08 5 CH_bna_576 3 3 0.000000915266
Capsicum annuum PGAv.1.6.scaffold186 5 CH_can_849 2 2 0.000826105
Lotus japonicus chr5 5 CH_lja_167 3 3 0.0000000767031
Lonicera japonica GWHAAZE00000004 5 CH_lonja_1066 2 2 0.000359324
Magnolia biondii Chr10 5 CH_mbi_921 2 2 0.000145698
Malus domestica Chr17 5 CH_mdo_532 3 5 0.000000431359
Medicago truncatula chr6 5 CH_mtr_170 7 27 0.00000000000000215832
Populus trichocarpa Chr07 5 CH_ptr_754 2 2 0.000578001
Quercus lobata CM012294 5 CH_qlo_1651 2 3 0.00046464
Salix brachista GWHAAZH00000004 5 CH_sbr_600 2 2 0.000378084
Simmondsia chinensis GWHAASQ00000010 5 CH_sci_397 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_128 8 10 3.04697e-25
Sapria himalayana scaffold2_22354274 5 CH_shi_85 3 3 0.00000000490454
Selaginella moellendorffii scaffold_4 5 CH_smo_277 2 2 0.000280112
Trochodendron aralioides group10 5 CH_tar_885 2 2 0.000600366
Trochodendron aralioides group1 5 CH_tar_886 2 2 0.000600366
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_202 3 3 0.000000129529
Vigna mungo CM024079.1 5 CH_vmu_529 2 2 0.000387685
Vanilla planifolia CM028159.1 5 CH_vpl_675 2 3 0.000664951
Actinidia chinensis Lachesis_group3 6 CH_ach_153 3 3 0.000000730343
Arabidopsis lyrata scaffold_1 6 CH_aly_734 2 2 0.000990066
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 6 CH_arhy_1310 2 2 0.000838273
Arabidopsis thaliana Chr1 6 CH_ath_562 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00009 6 CH_atr_179 4 7 0.0000000260371
Brassica carinata ChrB04 6 CH_bca_548 4 11 0.000000122171
Brassica carinata ChrC07 6 CH_bca_812 3 3 0.0000015765
Brassica napus C08 6 CH_bna_576 3 3 0.000000915266
Capsicum annuum PGAv.1.6.scaffold186 6 CH_can_849 2 2 0.000826105
Lotus japonicus chr5 6 CH_lja_167 3 3 0.0000000767031
Lonicera japonica GWHAAZE00000004 6 CH_lonja_1066 2 2 0.000359324
Magnolia biondii Chr10 6 CH_mbi_921 2 2 0.000145698
Malus domestica Chr17 6 CH_mdo_532 3 5 0.000000431359
Medicago truncatula chr6 6 CH_mtr_170 7 27 0.00000000000000215832
Populus trichocarpa Chr07 6 CH_ptr_754 2 2 0.000578001
Quercus lobata CM012294 6 CH_qlo_1651 2 3 0.00046464
Salix brachista GWHAAZH00000004 6 CH_sbr_600 2 2 0.000378084
Simmondsia chinensis GWHAASQ00000010 6 CH_sci_397 2 2 0.000255428
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_128 8 10 3.04697e-25
Sapria himalayana scaffold2_22354274 6 CH_shi_85 3 3 0.00000000490454
Selaginella moellendorffii scaffold_4 6 CH_smo_277 2 2 0.000280112
Trochodendron aralioides group10 6 CH_tar_885 2 2 0.000600366
Trochodendron aralioides group1 6 CH_tar_886 2 2 0.000600366
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_202 3 3 0.000000129529
Vigna mungo CM024079.1 6 CH_vmu_529 2 2 0.000387685
Vanilla planifolia CM028159.1 6 CH_vpl_675 2 3 0.000664951

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001