Functional clusters
Information
- Type InterPro
- Description Leucine-rich repeat 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_231 | 6 | 11 | 0.000000161352 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_566 | 3 | 3 | 0.000440468 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_84 | 8 | 24 | 0.00000000000581465 |
| Brassica carinata | ChrC03 | 5 | CH_bca_1408 | 5 | 23 | 0.000116999 |
| Brassica carinata | ChrB01 | 5 | CH_bca_825 | 4 | 4 | 0.00000174735 |
| Brassica carinata | ChrB01 | 5 | CH_bca_940 | 7 | 58 | 0.00000408252 |
| Brassica napus | C05 | 5 | CH_bna_1201 | 4 | 8 | 0.000259646 |
| Brassica napus | C02 | 5 | CH_bna_13 | 17 | 47 | 6.32967e-28 |
| Brassica napus | A09 | 5 | CH_bna_890 | 7 | 63 | 0.0000252601 |
| Brassica napus | C09 | 5 | CH_bna_954 | 6 | 36 | 0.0000394034 |
| Brassica napus | C09 | 5 | CH_bna_993 | 4 | 6 | 0.000055854 |
| Brassica oleracea | C8 | 5 | CH_bol_138 | 6 | 10 | 0.000000000995956 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_145 | 6 | 13 | 0.0000000000000391306 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_338 | 5 | 7 | 0.00000159838 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_189 | 6 | 7 | 0.0000000111705 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_310 | 5 | 6 | 0.00000155892 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_510 | 4 | 5 | 0.000210284 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_8 | 19 | 29 | 3.10238e-31 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_83 | 8 | 8 | 0.0000000000000594604 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_579 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_632 | 2 | 2 | 0.000134617 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_183 | 8 | 36 | 0.000000000495685 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_624 | 4 | 11 | 0.000255527 |
| Eutrema salsugineum | scaffold_14 | 5 | CH_esa_58 | 9 | 12 | 0.0000000000000133473 |
| Gossypium hirsutum | A02 | 5 | CH_ghi_471 | 4 | 8 | 0.000000125646 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_588 | 4 | 13 | 0.00000128145 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_276 | 4 | 10 | 0.000000375496 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_303 | 4 | 5 | 0.00000000157509 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_649 | 3 | 4 | 0.00000501644 |
| Lotus japonicus | chr2 | 5 | CH_lja_59 | 6 | 16 | 0.00000000000415516 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_297 | 4 | 9 | 0.00000000545293 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1303 | 3 | 4 | 0.000441991 |
| Medicago truncatula | chr4 | 5 | CH_mtr_823 | 4 | 8 | 0.00000982141 |
| Petunia axillaris | Peaxi162Scf00338 | 5 | CH_pax_170 | 4 | 6 | 0.0000000479186 |
| Prunus persica | Pp08 | 5 | CH_ppe_382 | 3 | 4 | 0.000000667696 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_381 | 3 | 5 | 0.0000185618 |
| Papaver somniferum | NC_039364.1 | 5 | CH_pso_678 | 3 | 6 | 0.00000435377 |
| Quercus lobata | 8 | 5 | CH_qlo_341 | 9 | 56 | 0.0000000000000817834 |
| Striga asiatica | scaffold34 | 5 | CH_sas_3 | 8 | 9 | 1.11544e-19 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_27 | 6 | 6 | 0.000000000000110541 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_429 | 4 | 21 | 0.00000172161 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_439 | 3 | 4 | 0.0000391749 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_231 | 6 | 11 | 0.000000161352 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_566 | 3 | 3 | 0.000440468 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_84 | 8 | 24 | 0.00000000000581465 |
| Brassica carinata | ChrC03 | 6 | CH_bca_1408 | 5 | 23 | 0.000116999 |
| Brassica carinata | ChrB01 | 6 | CH_bca_825 | 4 | 4 | 0.00000174735 |
| Brassica carinata | ChrB01 | 6 | CH_bca_940 | 7 | 58 | 0.00000408252 |
| Brassica napus | C05 | 6 | CH_bna_1201 | 4 | 8 | 0.000259646 |
| Brassica napus | C02 | 6 | CH_bna_13 | 17 | 47 | 6.32967e-28 |
| Brassica napus | A09 | 6 | CH_bna_890 | 7 | 63 | 0.0000252601 |
| Brassica napus | C09 | 6 | CH_bna_954 | 6 | 36 | 0.0000394034 |
| Brassica napus | C09 | 6 | CH_bna_993 | 4 | 6 | 0.000055854 |
| Brassica oleracea | C8 | 6 | CH_bol_138 | 6 | 10 | 0.000000000995956 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_145 | 6 | 13 | 0.0000000000000391306 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_338 | 5 | 7 | 0.00000159838 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_189 | 6 | 7 | 0.0000000111705 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_310 | 5 | 6 | 0.00000155892 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_510 | 4 | 5 | 0.000210284 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_8 | 19 | 29 | 3.10238e-31 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_83 | 8 | 8 | 0.0000000000000594604 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_579 | 2 | 2 | 0.000695233 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_632 | 2 | 2 | 0.000134617 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_183 | 8 | 36 | 0.000000000495685 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_624 | 4 | 11 | 0.000255527 |
| Eutrema salsugineum | scaffold_14 | 6 | CH_esa_58 | 9 | 12 | 0.0000000000000133473 |
| Gossypium hirsutum | A02 | 6 | CH_ghi_471 | 4 | 8 | 0.000000125646 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_588 | 4 | 13 | 0.00000128145 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_276 | 4 | 10 | 0.000000375496 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_303 | 4 | 5 | 0.00000000157509 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_649 | 3 | 4 | 0.00000501644 |
| Lotus japonicus | chr2 | 6 | CH_lja_59 | 6 | 16 | 0.00000000000415516 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_297 | 4 | 9 | 0.00000000545293 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1303 | 3 | 4 | 0.000441991 |
| Medicago truncatula | chr4 | 6 | CH_mtr_823 | 4 | 8 | 0.00000982141 |
| Petunia axillaris | Peaxi162Scf00338 | 6 | CH_pax_170 | 4 | 6 | 0.0000000479186 |
| Prunus persica | Pp08 | 6 | CH_ppe_382 | 3 | 4 | 0.000000667696 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_381 | 3 | 5 | 0.0000185618 |
| Papaver somniferum | NC_039364.1 | 6 | CH_pso_678 | 3 | 6 | 0.00000435377 |
| Quercus lobata | 8 | 6 | CH_qlo_341 | 9 | 56 | 0.0000000000000817834 |
| Striga asiatica | scaffold34 | 6 | CH_sas_3 | 8 | 9 | 1.11544e-19 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_27 | 6 | 6 | 0.000000000000110541 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_429 | 4 | 21 | 0.00000172161 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_439 | 3 | 4 | 0.0000391749 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |