Functional clusters
Information
- Type InterPro
- Description Zinc finger, RING/FYVE/PHD-type
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Eucalyptus grandis | Chr10 | 5 | CH_egr_920 | 6 | 7 | 0.00000584425 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_991 | 7 | 13 | 0.0000225612 |
| Erythranthe guttata | scaffold_14 | 5 | CH_egut_628 | 7 | 13 | 0.000305149 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_589 | 5 | 5 | 0.000115212 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_938 | 5 | 5 | 0.000131882 |
| Lupinus albus | Lalb_Chr25 | 5 | CH_lal_807 | 10 | 39 | 0.000928591 |
| Medicago truncatula | chr1 | 5 | CH_mtr_1222 | 5 | 6 | 0.000312317 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_788 | 5 | 7 | 0.000970172 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_556 | 5 | 5 | 0.000233368 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_568 | 8 | 20 | 0.000321658 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_851 | 12 | 68 | 0.0000097766 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_1216 | 6 | 7 | 0.000000538099 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_2349 | 10 | 72 | 0.000327666 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_836 | 6 | 10 | 0.000361571 |
| Zea mays | 2 | 5 | CH_zma_535 | 8 | 24 | 0.000902583 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_920 | 6 | 7 | 0.00000584425 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_991 | 7 | 13 | 0.0000225612 |
| Erythranthe guttata | scaffold_14 | 6 | CH_egut_628 | 7 | 13 | 0.000305149 |
| Fragaria x ananassa | Fvb5-4 | 6 | CH_fan_1037 | 12 | 63 | 0.000418146 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_589 | 5 | 5 | 0.000115212 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_938 | 5 | 5 | 0.000131882 |
| Lupinus albus | Lalb_Chr25 | 6 | CH_lal_807 | 10 | 39 | 0.000928591 |
| Medicago truncatula | chr1 | 6 | CH_mtr_1222 | 5 | 6 | 0.000312317 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_788 | 5 | 7 | 0.000970172 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_556 | 5 | 5 | 0.000233368 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_568 | 8 | 20 | 0.000321658 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_851 | 12 | 68 | 0.0000097766 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_1216 | 6 | 7 | 0.000000538099 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_2349 | 10 | 72 | 0.000327666 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_836 | 6 | 10 | 0.000361571 |
| Zea mays | 2 | 6 | CH_zma_535 | 8 | 24 | 0.000902583 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |